Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_17475
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Entry
CFSAN001992_17475 CDS
T02479
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFSAN001992_17475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
senj03021
]
CFSAN001992_17475
Transcription machinery [BR:
senj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFSAN001992_17475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AGF83777
LinkDB
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Position
complement(3620555..3622402)
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AA seq
615 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTA
THVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAK
GRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
attgaagatatcatccaaatgatcaacgacatgggtattcaggtaatggaagaagcgcct
gatgccgatgatctgctgctggctgaaaataccaccagcaccgatgaagatgcggaagaa
gctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgtacgactgacccggta
cgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgggaaggcgaaatcgac
atcgctaaacgtatcgaagacgggatcaaccaggttcaatgctccgttgccgaatacccg
gaagccattacctatctgctggaacagtacgatcgcgttgaggctgaagaggctcgtttg
tccgatcttatcaccggctttgtcgatccgaacgcggaagaagagatggcgccgaccgca
actcacgtcggttctgaactctcccaggaagacctggatgatgacgaagacgaagatgaa
gaagacggcgacgatgacgccgccgatgacgacaacagcattgaccctgaactggcacgc
gaaaaattcgctgagctgcgcgcgcaatacgtcgttacgcgcgacaccatcaaagcgaaa
ggccgcagccatgctgccgcgcaggaagagattctgaagctgtctgaagtgttcaaacag
ttccgtctggtaccgaagcaattcgactatctggtcaacagtatgcgcgtgatgatggat
cgcgtgcgtactcaggaacgtctgatcatgaagctctgcgtcgagcagtgcaaaatgccg
aagaagaactttatcacgctgtttaccggtaacgaaaccagcgaaacctggttcaatgcc
gctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtcgcggaagaagtgcaa
cgctgcctgcaaaaactgcggcagattgaagaagagaccggtctgaccatcgaacaggtg
aaagacatcaaccgtcgcatgtccatcggggaagcgaaagcccgccgtgcgaaaaaagag
atggttgaagcgaacttacgtctggttatttctatcgccaagaaatacaccaaccgcggt
ctgcagttccttgacctgattcaggaaggcaacatcggtctgatgaaagcggttgataaa
tttgaataccgtcgtggttacaagttctccacctacgcaacctggtggatccgtcaggcg
atcacccgttctatcgccgatcaggcgcgcaccatccgtattccggtgcatatgattgag
accatcaacaaactcaaccgtatctcccgccagatgctgcaagagatgggccgcgagcca
acgccggaagagctggctgaacggatgctgatgccggaagataaaattcgtaaggtgctg
aagattgccaaagagcctatctccatggaaacgccgatcggcgatgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgccactaccgag
agcctgcgtgccgcaacgcacgacgtgctggctggcctgaccgcccgtgaagcgaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgatgttacccgcgaacgaatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgccaccctagccgttctgaagtgctgcgcagcttcctcgacgattaa
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