Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_18610
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Entry
CFSAN001992_18610 CDS
T02479
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CFSAN001992_18610 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
senj03400
]
CFSAN001992_18610 (recD)
Enzymes [BR:
senj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CFSAN001992_18610 (recD)
DNA repair and recombination proteins [BR:
senj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFSAN001992_18610 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
NAT10_TcmA_helicase
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
UvrD-helicase
AAA_22
SLFN-g3_helicase
nSTAND3
MukB
AAA_16
AAA_28
UvrD_C
CbiA
T2SSE
FtsK_SpoIIIE
SRP54
DEAD
TrwB_AAD_bind
NPHP3_N
NTPase_1
AAA
ATPase
DUF6079_2nd
Motif
Other DBs
NCBI-ProteinID:
AGF84000
LinkDB
All DBs
Position
3854864..3856699
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AA seq
611 aa
AA seq
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MTIQERLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTL
TEEAHPLLVAWISETATPIDWKKRLLASAAVSCGDSPAPLILCGDRLYLNRMWCNERTVA
RFFNEVNQAIAVDEDQLSRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTT
VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQ
LASVEAGAVLGDICAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYR
FGSDSGIGKLAAAINCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLR
LLHEKATPEAILQAFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGR
PVMIARNDSALGLFNGDIGIALDRGQGLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHK
SQGSEFDHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADERILASAIVTRTERRSGL
ATLFDEVSRTG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacaatccaggagcggttgctggaggccgttgaacaaaaactcttacggcccattgat
gcccagtttgctttaaccgtcgccggtaacgacgatcccgccgtgacgctggcggcagcg
ctgcttagtcatgacgcaggtgaaggtcacgtgtgtctgccgttgtcgcgtttaacgtta
acggaggaggcgcatcccttactggtcgcctggataagcgaaacggctacgccaattgac
tggaaaaagcggttactggcgtctgcggcggttagctgcggcgatagccccgcgccgtta
attctgtgcggcgatcgcctctacctgaatcgcatgtggtgcaacgagcgtacggttgcg
cgcttttttaacgaggttaaccaggccatcgccgtagatgaagatcagttatcccgtatt
ctggacgcgctattccctccgacagacgaggtgaactggcaaaaggtggccgccgccgta
gcgctaactcgccgtatctccgtgatttcaggcggtcccggcaccggtaaaaccaccacc
gtcgcgaagctgctggcggcattaattcaaatggcggatggcgaacgttgccgtatccgg
ctggcggcgccgaccgggaaagcggccgcacgcctgacggagtcgctcggcgcggcgttg
cgtcagcttcctcttaccgatgcgcagaaaaagcgtataccggaggacgccagtacgctg
caccgactgctgggcgcacagcccggcagccagcgattacgccatcatgcgggcaacccg
ctgcatctggacgtgctggtggtcgatgaagcatcaatgattgatttgccgatgatgtca
cgtttgattgacgctctgccgccgcacgggcgggtcatttttcttggcgatcgcgatcag
ttggcatccgttgaggcgggtgctgtgttgggcgatatttgcgcctatgtcaacgcaggg
tttacggcggaacgcgcccgacagctaagtcgactaacagggagcgccattccggcgggg
gccggaacgcaagccgcatctttacgcgatagcctctgtttattgcaaaagagctaccgt
ttcggcagcgattctggcatcggcaagctggcggcggcgattaactgcggcgacaggtcg
gcaatccaggctgtttttcagcaggggtttagcgatatagagaagcgtacattgcaaagc
agcgacgattatgccgggatgctggatgaagcgctggcgggctatggtcgctacctgcgg
ttgctgcatgagaaagcgacgccggaggcaatccttcaggctttcaatgagtatcaactg
ctttgcgcgctgcgtgaaggcccatttggcgtgaggggactgaatgaccgcattgagcag
gcgatggtgcagcaacgaaaaattcagcggcacccgcattctcgctggtatgaagggcgt
ccggtaatgattgcgcgcaacgacagcgcgttggggctatttaacggcgatattggtatt
gcgctcgatcgcgggcaggggttacgcgtctggtttgtgatgccggacggcacgatcaag
tccgttcagcccagccgtctgccggaacatgatacaacctgggcgatgacggtacataaa
tctcaggggtctgaatttgatcacgccgcgctgattttacccagccagcgttcgccggtc
gtgacgcgggagctggtgtataccgctgttacgcgggcgcggcggcggttatctctgtat
gccgatgaacggatcctggcaagcgcgattgtgacacgtacggagcggcgcagcggatta
gccaccttatttgatgaagtcagtcgtaccggataa
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