Secondary endosymbiont of Trabutina mannipara: TRABTM_A_00280
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Entry
TRABTM_A_00280 CDS
T04494
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
senm
Secondary endosymbiont of Trabutina mannipara
Brite
KEGG Orthology (KO) [BR:
senm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TRABTM_A_00280 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
senm03021
]
TRABTM_A_00280 (rpoD)
Transcription machinery [BR:
senm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TRABTM_A_00280 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
SBT81912
UniProt:
A0A1C3L3Q3
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All DBs
Position
I:24795..26615
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AA seq
606 aa
AA seq
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MEQNSKSQLKLLVKRGKKQGYLTFSEVNDHLQDEVVDPDHIEDIIQMINNMGIQVMEDTP
EVDDMLLVDSDNDEDTVEAATQVLSSVESGRTNDPVRMYMREMGTVELLTREGEIDIAKR
IEDGINQVQCSVAEYPENIIYLLKQYTLIESGDARLSELITGFIDPNVEDSIFPNAIHVG
SKLTTNEIEDVEEDHVDSPYLDSSIDPELAKQKFMRLREQYEITSNVIKQHGRNHEKSTL
AIINLSDVFKQFRLVPKQFNYLINNMRTMMDRVRTQERIIMKLCVEISKMPKNNFITLFS
GNETNSSWFKTAIDMNKPWSKKLHEFDSDIHCSLHKLRQIEEETGLTINQVKDINRRMSI
GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPNPEELAEYM
LIPEDKIRKIMKIAKDPISMETPIGEDEDAHLGDFIEDTTLELPLDSATSESLRVATHAS
LAGLTAREAKVLRMRFGIDMHTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDVL
RSFLED
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaattcgaagtcacagctcaagctacttgtaaaacgtggtaaaaagcaaggt
tatttgactttttccgaagtaaacgaccatcttcaggatgaagttgtagatcctgatcat
atagaagacattattcagatgataaataatatgggcatacaagtgatggaagatacacct
gaagttgatgatatgttgctggtagattctgataatgatgaagatacggtagaagcagca
acacaagttttatctagcgttgaatctggacgtactaacgatccagtacggatgtatatg
cgtgaaatgggtacagtggaactcttaactagagaaggtgaaattgatattgctaaacgt
atagaagatggtataaatcaagttcaatgttcagttgctgaatatcctgaaaacataatt
tatttattaaaacagtatactctgattgaatcaggagatgctcgtttatctgagcttata
actggatttattgatcctaatgtggaagattctatttttcccaatgcaattcatgttggt
tctaaattaactaccaacgaaattgaagatgttgaagaagatcatgttgatagcccctat
ttagatagtagcatcgatcctgaactggcaaaacaaaaatttatgagactacgtgagcag
tacgaaataactagtaatgttataaaacaacatggacgtaatcatgaaaaatcaacttta
gcaattataaatctttctgatgtatttaaacaatttcgtttagtaccaaagcaatttaat
tatctaataaacaatatgcgtacgatgatggatcgtgtgcgcactcaagaacgtattatt
atgaagctttgcgttgaaattagcaaaatgccgaaaaataattttattactctattttct
ggtaatgaaactaattcaagttggtttaaaactgcaatagatatgaataaaccatggtca
aaaaaattgcatgaatttgatagtgatatacattgcagtttacataaattacgacaaatt
gaagaagaaactggtctaaccatcaatcaagtaaaagatattaaccgtcgtatgtctatt
ggtgaagctaaagcacgacgtgctaaaaaagaaatggtagaagcaaatttacgtttagtt
atctctatagctaaaaaatatactaatcgtggattacaatttctagatttaattcaggaa
ggaaacataggtttaatgaaagcggtagataaatttgaatatcgccgcggttataagttt
tcaacctatgcaacttggtggattcgtcaggctattactcgttccattgctgatcaggca
cgcactatccgtattccagtacatatgattgaaactataaataagctaaatcgtatatct
agacaaatgttgcaagaaataggacgcgaaccaaatccagaagaactggctgaatatatg
cttatacctgaagataagatccgtaaaataatgaaaattgctaaagatcccatttctatg
gagactcctattggagaagacgaagatgcacatctaggagattttattgaagatacaaca
ctagaactaccattagattctgctacttctgaaagtttacgtgtagccactcatgctagt
cttgcaggacttactgcacgtgaagctaaggttttgcgtatgagatttggtatagatatg
catacagatcatactttagaagaagttggaaagcaatttgatgttactcgtgaacgtatt
cgtcaaattgaagcgaaagcactacgtaaattacgtcatcctagtagatctgatgtttta
cgaagttttttagaggattaa
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