Secondary endosymbiont of Trabutina mannipara: TRABTM_A_02240
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Entry
TRABTM_A_02240 CDS
T04494
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
senm
Secondary endosymbiont of Trabutina mannipara
Pathway
senm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRABTM_A_02240 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senm03019
]
TRABTM_A_02240 (deaD)
03009 Ribosome biogenesis [BR:
senm03009
]
TRABTM_A_02240 (deaD)
Enzymes [BR:
senm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TRABTM_A_02240 (deaD)
Messenger RNA biogenesis [BR:
senm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TRABTM_A_02240 (deaD)
Ribosome biogenesis [BR:
senm03009
]
Prokaryotic type
rRNA helicases
TRABTM_A_02240 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
SBT82066
UniProt:
A0A1C3L465
LinkDB
All DBs
Position
I:236151..237557
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AA seq
468 aa
AA seq
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MSKVEKYFSDLGLKAHILNALADLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNINPELAVPQMLVLAPTRELAVQVGDACTDFAKHIKGVNIVSLYGGQRYDLQLR
ALRYGPQVVVGTPGRLLDHLKRGTLNLSKLNGLVLDEADEMLRMGFIEDVENILSKIPAK
HQTALFSATMPEVIRRITRRFMNNPYEVRIQSSIKNCPDISQCYWIVQGIRKNEALARFL
EAEDFDAAIIFVRTKNATLEVAEALEKNGYNSAALNGDMNQNLREQTLDRFKNGRLDILI
ATDVAARGLDVDRISLVVNYDIPLDYESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERMTKLTIKEVKLPTAEILSSRRLAKFADKVQNQLESNDLNMYRALLAKLQPAAEELDME
TLAAALLKMAQGERPLILPQVPNNKVPNNIKRRILRRNLIDRSRGSRR
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtagaaaaatatttttccgatttggggcttaaagctcatatacttaacgca
cttgcagatctaggttatgaaaaaccatcaccaatacagtctgcctgtattccacatctt
ttagctggacgtgatgtattaggtatggctcaaacaggtagcggtaaaactgctgctttt
tctttaccgctgttaaataatattaatccagaattagcggtaccacagatgttagttcta
gctcctactagagaactagcagtacaggtaggtgatgcctgtacagattttgctaagcat
ataaaaggtgttaatatagtttccttatacggaggacaacgttatgacttacaattacgc
gccctgcgctatgggccacaagttgttgtaggtactccaggaagacttttagatcattta
aaaagaggtactctaaacttatctaagttaaatggattagtgttagatgaagcggatgaa
atgttgcgaatggggtttatagaagatgtagaaaatattctatctaagataccagctaaa
catcaaactgctctattctcagctactatgccagaagtaattcgtagaattacgcgacgg
tttatgaacaatccatatgaagtacggattcaatccagtataaaaaactgtccagatatc
agccaatgctattggatagttcaaggaatacgcaaaaatgaagcactggctcgtttctta
gaagcagaagattttgatgcagctattatatttgtgcgtactaaaaatgcaacgctggaa
gtagcagaagctttggaaaaaaacggttataatagcgctgctctcaatggtgatatgaat
caaaatttacgagaacagacattagatcgttttaaaaatggtcgcttagatatactaatc
gctactgatgtcgctgcacggggactagatgttgatcgcattagcttggtcgtcaactat
gatattccgctcgattatgaatcttatgttcatcgtattggacgtaccggtcgtgctggt
agagctggacgggcactattatttgtagaaaaccgcgaacgacgtctattgcgtaatatt
gaacgtatgactaagctgacaataaaggaagtaaaattacctactgcagaaatattaagc
agccgtagattagctaagtttgcagataaagtacaaaaccagctagaaagtaacgatctt
aatatgtatcgcgcactgttagcaaaattgcaacctgcggcagaagagctagatatggaa
actttggctgcagcattgttgaaaatggcccagggagaacgtccacttatcttaccacaa
gttcctaataataaagttcctaataatattaaacgtcgtattttgcgacgtaatttaatt
gatcgcagtaggggcagcaggcgttaa
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