KEGG   Secondary endosymbiont of Trabutina mannipara: TRABTM_A_02770
Entry
TRABTM_A_02770    CDS       T04494                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
senm  Secondary endosymbiont of Trabutina mannipara
Pathway
senm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:senm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TRABTM_A_02770 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:senm03021]
    TRABTM_A_02770 (rpoB)
   03400 DNA repair and recombination proteins [BR:senm03400]
    TRABTM_A_02770 (rpoB)
Enzymes [BR:senm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TRABTM_A_02770 (rpoB)
Transcription machinery [BR:senm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TRABTM_A_02770 (rpoB)
DNA repair and recombination proteins [BR:senm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TRABTM_A_02770 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: SBT82115
UniProt: A0A1C3L4B8
LinkDB
Position
I:complement(286820..290866)
AA seq 1348 aa
MRSSMFFYSHTEKKRIRKDFGKRPQILDIPYLLSIQLDSFQKFIEQDIEGQYGLEAVFRS
IFPIKSYNGKSELQYVTYRLGDPIFDIKECQMRGITFSSPLRVKLRLIIYEREISEITVK
NIKEQEVYMGEIPLMTDNGTFIINGTERVVVSQLHRSPGVFFDSDKGKIHSSGKILYNAR
IIPYRGSWLDFEFDLKDNLFFRIDRRRKLPVTLLLRALNYSTNQILDIFFKKVIYEINNQ
NLIMNLIPEFLRGETALFDIKEKGILYVEKGRRVTSRHIDHLKKDNIEQINVPIEYIIGK
IVAKDYFDEKTGENIIYANKALTIDIINKLIKAGHKIIETLFINNLDNGAYISETLLIDP
TNDRLNALLEIYRMMRPGELPTNEAAENLFKNLFFSEERYDLSAVGRMKFNRSLLRKESE
GPGILEKKDIVDVIKKLIDIRNGKGEIDDIDHLGNRRIRAVGEMAENQFRIGLLRVERAV
KERLSLGDMDNLMPQDMINAKPISAAIKEFFSSSQLSQFMDQNNPLSEITHKRRISALGP
GGLTRERASFEVRDVHPTHYGRICSIETPEGPNIGLINSLSVYAQTNEYGFLETPYRLVQ
NGVVTDEIHYLSAIEEGYFVIAQANTNLSKDGHFVDEFITCRNKGESSLFNSKQINYMDV
STQQIVSVGASLIPFLEHNDANRALMGANMQRQAIPNLITDKPLVGTGMERIVAVDSGVT
IVAKRSGKVQYVDASRIVINVNSDETFSGEAGIDIYNLKKYIRSNQNTCINQKPCVSLGE
LINRGDVIADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLISEKVVQEDRFTTVHIQE
MTCISRDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVSDGDILVGKVTPKGESQL
TPEEKLLRAIFGEKASDVKDSSLRVPNGTSGVVIDVQIFTRDGVKKDKRALEIEEIQLQQ
IKKDLTEELHIFENGLFSRIRNLLILSGIESSKLDKLTRKNWLEIDIINKDIKNQFDQLI
EQYQELKYEFQKKLEAKKNKIIQYDNLAPGILKVVKVYLAVKLQIQPGDKMAGRHGNKGV
ISKINPIEDMPYDENGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINYMLNQH
NNIKKLRKFIQKAYNVGDNLRQKINIDSFSDEEILCLANNLKKGMPIATPVFDGAKEKEI
KELLKLSGLPSSGQITLFDGRTGEKFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT
QQPLGGKAQFGGQRFGEMEVWALEAYGAAYSLQEMLTIKSDDVNGRTKMYKNIIDGNYMM
EPSMPESFNVLLKEIRSLGINIELEKNK
NT seq 4047 nt   +upstreamnt  +downstreamnt
ttgaggagctctatgtttttttactctcatactgaaaaaaaacgtattcgtaaagatttc
ggaaaacgtccgcaaattttagatattccttatcttctttctattcagcttgattcattt
caaaaatttatagaacaagatatagaaggtcaatatggtttagaagcagtttttcgttct
atatttcctataaaaagctataatggtaaatctgaattacagtatgttacttatcgttta
ggagatcctatttttgatataaaagaatgccaaatgagggggataactttttcgtcacct
ttacgtgtaaaattgcgtcttattatttatgaacgcgaaatatcagaaattacagtaaag
aatataaaagaacaagaagtatatatgggtgaaataccactcatgacagataacggtact
tttataattaatggtacagaacgtgtcgttgtttctcaattacaccgtagtccaggagtt
ttttttgatagtgataaaggtaaaatacattcttctggaaaaatattatataatgctcgc
attattccttaccgtggttcatggttagattttgaatttgatttaaaagataatttattt
tttcgtattgatcgtcgtcgtaaattacctgttactcttcttttaagagcccttaattat
agtactaatcaaattttagatatttttttcaaaaaagtaatttatgagattaataatcaa
aatttgataatgaacttaattcctgaatttttacgtggtgaaactgctttatttgatata
aaagagaaaggtattctttatgtggaaaaaggtcgtagagtaacatcacgtcatattgat
catttaaaaaaagataatattgaacagattaatgttcctatagaatatattataggaaaa
atagtagcaaaagattattttgatgaaaaaactggagaaaatattatttatgctaacaaa
gcattaacaattgatataatcaacaaattaattaaagcaggacataaaattattgaaaca
ttatttataaataatttagataatggtgcttatatttctgaaactttacttattgatcct
actaatgatcgtttaaatgcacttttagaaatatatcgtatgatgcgtcctggtgaatta
cccactaatgaagccgctgaaaatttatttaaaaatttatttttttcagaagaacgttat
gatttatcagcagtaggtaggatgaaatttaatcgttcacttttacgtaaagaaagtgaa
ggtcctggtattttagaaaaaaaagatattgttgatgttattaaaaaacttattgatatt
cgaaatggtaaaggtgaaattgacgatattgatcatttaggtaatagaagaattcgtgca
gtaggtgaaatggcagaaaatcagtttcgtattggattattacgtgtagaacgtgcagta
aaagaacgtctatctttaggagatatggataatttaatgccgcaagatatgattaatgct
aaaccaatttcagccgcaataaaagaattttttagttctagtcaattatcacaatttatg
gatcaaaataatcctctttcagaaattacacataaaagacgtatttctgcattaggacct
ggtggtttaactcgtgaacgtgcaagttttgaagttcgtgatgtacatccaactcattat
ggtcgtatatgttctatagaaactccagaaggacccaatattggtcttataaactcatta
tctgtatatgcacaaactaatgaatatggatttcttgaaactccctatcgtcttgtacag
aatggtgttgttactgatgaaatacattatctttcagcaattgaagaaggctattttgtt
atagcacaagcaaatactaatcttagtaaagatggtcattttgtagatgagtttataact
tgtcgcaataaaggcgaatcaagtttatttaacagtaaacaaattaattatatggatgtt
tctactcaacaaatagtatcagttggtgcttctcttattccatttttagaacataatgat
gctaatagggcattaatgggtgccaatatgcaacgtcaagcaatacctaatttgattact
gataaaccattagttggtactggtatggaacgtattgttgcagttgattcaggtgttact
attgtagcaaaacgtagtggaaaagtacaatacgtagatgcatctcgtattgttattaat
gttaattctgatgaaactttttctggagaagctggtattgatatttataatctaaaaaaa
tatattcgttctaatcaaaatacttgtattaatcaaaaaccttgtgtttctttaggtgaa
ctaattaatcgtggagatgtaatagctgatggaccatctacagatttaggtgagttagct
cttggtcaaaatatgcgtattgcctttatgccttggaatggttataattttgaagattct
atgttaatatctgaaaaagttgtacaggaagatcgttttactactgtacatattcaggaa
atgacttgtatatctcgtgatacaaaattaggttctgaagaaattactgctgatattcca
aatgtaggagaatctgcactttcaaaattagatgaatcaggtattgtatatattggtgct
gaagttagtgatggtgatattttagtaggtaaagtcacaccaaaaggtgaaagtcaatta
acaccagaagaaaaattattaagagctatttttggtgaaaaagcttctgacgtaaaagat
tcatcattacgggtaccaaatggtacttcaggtgttgttattgatgttcaaatttttact
cgagatggcgttaaaaaagataagcgtgcgttagaaatagaagaaatacaacttcaacag
attaaaaaagaccttactgaagaattacatatttttgaaaatggattattttcacgtatt
cgtaatcttcttattcttagtggaatagaatcctcaaaattagataaattaacacgtaaa
aattggttagaaatagatattataaataaagatattaaaaatcaatttgatcaacttata
gaacaatatcaagaacttaagtatgaatttcaaaagaaattagaagcaaagaaaaataaa
ataattcaatatgataatttagcaccaggtatacttaaagtagttaaagtatatctagca
gtaaaactgcaaattcaacctggtgataaaatggcaggacgtcatggtaataaaggtgta
atttctaaaattaatccaattgaagatatgccttatgatgaaaatggtgtacctgtagat
atagttctaaatcctttaggtgttccttctaggatgaatataggtcaaattttagaaact
catttaggtatggcagcaaaaggtattggtgataaaatcaattatatgctaaatcagcat
aataatattaaaaaattacgtaaattcattcagaaagcttataatgtaggtgataattta
cgccagaaaataaacattgattcattttctgatgaagaaatactttgtttagcaaacaac
ttaaaaaaaggaatgccaattgctacaccagtttttgacggtgctaaagaaaaagaaatt
aaagaattattaaaactgagtggtttacctagttctggtcaaataactttatttgacgga
agaacaggagaaaaattcgaacgacaggttactgttggatatatgtatatgttaaaactt
aatcatttagtagatgacaaaatgcatgcccgttctacgggatcttatagtttagttact
caacaacctttaggaggaaaagcacaatttggtggccagcgttttggagaaatggaagta
tgggctttagaagcatatggtgctgcttattcattacaagaaatgctaactattaaatca
gatgatgttaatggtagaactaaaatgtataaaaatatcattgatggtaattatatgatg
gaacccagtatgcctgaatcttttaatgttttattaaaagagattagatctttagggata
aatattgaattggaaaaaaataagtaa

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