Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_11790
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Entry
SN31241_11790 CDS
T02779
Name
(GenBank) ATP-dependent RNA helicase hrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
senn
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Brite
KEGG Orthology (KO) [BR:
senn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senn03019
]
SN31241_11790
Enzymes [BR:
senn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SN31241_11790
Messenger RNA biogenesis [BR:
senn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SN31241_11790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGS28153
LinkDB
All DBs
Position
1207109..1209550
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AA seq
813 aa
AA seq
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MEPFVTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQGPVAGKILLLEP
RRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLTRMIQRDPELRG
VGLVILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLDNDRLCQRLPDAPTIVS
EGRAFPVERRYQPLAAHLRFDEAVAMATAELLRNENGSLLLFLPGVGEIQRVHEHLASRV
GSDVLLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVA
RFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAAAQSDPEILHSD
LSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLMLGALEGERLSARGRKMAATGN
DPRLAAMLVNAGEGDSAATAAMLAAILEDPPRGGGTDLSVVFSRRQPGWQQRSQQLLKRL
QVRNGEPDSALIMPLLARAFSDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPL
LLQGSASPDARILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVS
VQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLPEYDWPAVDEAS
LLATLENWLLPHMTGVQSLRSLKSLNVTQALRGLLDYAMLQRLDSELPGHYTVPTGSRIT
IRYHEDNPPALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAY
REVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
gtggagccgtttgtgacgtcattgcccgttgccgccgtattgcctgaattgttgacagcc
ctaaaaaccgcgccgcaggttttgttgtccgcgcctaccggggcggggaaatccacctgg
ctgccgttgcaactcctgcaacaggggccagttgctggaaaaatccttctgcttgaaccg
cgtcgtctggcggcgcgtaatgtcgcgcagcgtctggcggaagcgttgaatgaaaagcct
ggcgaaacggtaggttaccggatgcgcgcgcaaagctgcgtggggccgcgtacccggctg
gaagtggtgacagaaggcgtattgaccagaatgattcagcgcgatcccgaattacgcggc
gtggggctggtgatactggatgaatttcatgagcgcagtttacaggcggatttagcgttg
gcgctgttgctggatatccagcaagggctccgtgacgatctcaggctgttaattatgtct
gcgacgctggataacgacaggctttgtcagcgactgcctgatgcgccgacgatcgtctcg
gaggggcgcgcgttcccggtggagcgacgttatcagccgctcgcggcgcatttgcgtttt
gatgaagccgtcgcgatggcgacagcggaactgctgcgcaatgaaaacggttcgctgctg
ctatttttacccggcgtaggcgaaatacagcgcgttcatgaacatctggcgtcgcgggta
gggagcgatgtcctgctttgtcctctgtatggcgcattgtctttggaggcgcaacgcaaa
gcgattgttcccgcccccgccgggatgcgtaaagtggtattggcgactaacattgccgaa
accagtttgacgattgaagggattcgtctggtcgtcgatagcgctcaggagcgcgtggcg
cgatttgacgcgcgaacgggactgacgcggctggttacgcagcgtatcagtcaggcatca
atgacgcagcgcgcggggcgcgccggacgactggcgccggggatctgtttacatctgctg
gccaaagaacaggcggagcgggcggcggcgcaaagcgatccggaaatcttacacagcgac
ctttccggtttattgatggaggtgttgcagtggggatgtcacgatccggcatcgcttttc
tggctggacaggccgccggaggtgaatcttcaggccgcccgccgtttattattgatgtta
ggcgcgctggagggcgagcggttaagcgcgcggggccggaaaatggcggcaacaggtaac
gatccgcgcctggcggcgatgttagtcaacgctggcgagggcgatagcgccgccactgcc
gccatgctcgcggccatccttgaggacccgccgcgcggcggcggtacggatttaagcgta
gtattttcgcggcgacagccgggctggcagcagcgtagccagcagcttttaaaacggctg
caggtgcgtaatggcgagccggatagcgcgcttattatgccgctgttggccagagcgttt
agcgaccgcatcgcgcggcgtcgtggtcaggaagggcgctatcagttagccaatggtatg
ggcgcgatgttagatgcggatgacgcgttgggacgtcatgaatggctgatcgcgccgctg
ttactgcaaggtagcgcctcgccggacgcccgaatattgttggcgcagccgctggatatt
gcctcgctgattcaggcgtgtcctgatttactgcgccagtccgacacggttgaatgggac
gaggcgcagggaacgttgaaagcatggcgcagaatgcgtattggacagttgacggttagc
gttcagccactggcgaagccgtctgaagaggagcttcatcaggcgatgctgaacggcatc
cgcgataaaggtctgtccgtccttaactggacgccggaagcggagcagttccgtctgcgt
ctgcactgtgcggcgaaatggctgccggaatatgactggcctgccgtggatgaggcgtcg
ctgctggcgactctggaaaattggttgctgccgcacatgacaggcgtacagtcgttacgg
agtctgaaatctctgaatgtgactcaggcgttacggggactgcttgactatgccatgctg
caacgtctggatagtgaactgcctgggcattacactgtgccgacgggaagccgaataacg
attcgttatcatgaagataacccgcccgcgctggcggtcagaatgcaggaaatgtttggc
gaagcgaagaccccaaccatcgctcagggccgcgtgccgctggtgctggaactgctttcg
ccagcgcagcgaccgctacagattacgcgcgatttaagcgctttctggcaaggggcgtat
cgcgaagtgcaaaaagagatgaagggccgttaccccaaacatgtctggccggacgatccg
gcgaatacggccccaacgcggcgcacgaagaagtattcgtga
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