Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_12260
Help
Entry
SN31241_12260 CDS
T02779
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
senn
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Pathway
senn03030
DNA replication
senn03430
Mismatch repair
senn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
senn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SN31241_12260
03430 Mismatch repair
SN31241_12260
03440 Homologous recombination
SN31241_12260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
senn03032
]
SN31241_12260
03400 DNA repair and recombination proteins [BR:
senn03400
]
SN31241_12260
Enzymes [BR:
senn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SN31241_12260
DNA replication proteins [BR:
senn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SN31241_12260
DNA repair and recombination proteins [BR:
senn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SN31241_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGS28200
LinkDB
All DBs
Position
1258389..1261823
Genome browser
AA seq
1144 aa
AA seq
DB search
MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL
LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELKEGLILLSGGRM
GDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPV
VATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEA
LENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKAKEGLEERLAFLFPDEEERKK
RRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTM
AAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVKALID
MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF
LGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM
KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPV
LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGI
DGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK
VVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQG
GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE
AIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY
VGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD
KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQ
LLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE
LEFD
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatgggctggcgaagaccgggccgctggtgaaaaaggcggcctcattaggtatg
cctgcgctggcgatcaccgattttaccaacctctgcggtctggtgaagttctacggagcg
ggtcatggcgcgggcattaaacccatcgtcggggcggactttaatgttcacaacgaactg
ctgggagatgagctgactcatctgacggtactggcggcgaataatacgggataccagaac
ctgacgttgctgatctcgaaagcgtatcagcgcggctacggcgcggcaggcccgattatc
gagcgcgactggctggtagagcttaaagaaggtttgatcctgctttccggcgggcgcatg
ggcgacgtaggccgctgtctgctacgcggcaaccaggcgctggtggaggagtgcgttgct
ttctatgaagcgcattttcccgatcgctactttctggaactgatccgcaccggcagacag
gatgaagagacttatctccatgctgcggttgaactggctgaggcacgtggtttgccggtt
gtcgcgacaaacgatgtccgtttccttgaaagcgatgattttgacgcccatgagattcgt
gtcgcgatccacgacggtttcacgctcgacgatcctaaacgtccacgcaattattcaccg
cagcagtatatgcgcagtgaagaagaaatgtgcgagctgttctccgatattccggaggcg
ctggaaaatacggtggagattgccaaacgctgcaacgtaacggtgcgtctgggtgaatat
ttcctgccgcagttcccgaccggcgatatgaccaccgaagattatctggtcaaaaaagcg
aaagaggggctggaagagcgtctggctttcctgtttccggacgaagaagagcgcaaaaag
cgtcgcccggaatatgacgagcgtctggatattgaactacaggttatcaaccagatgggg
ttccctggctacttcctcatcgtgatggagtttatccagtggtcaaaagataacggcgtg
ccggtagggccgggacgtggttccggggctggttcgctggtggcctacgcgctgaaaatt
accgaccttgatccgctggaatttgacctgctgttcgaacgtttcctgaacccggaacgt
gtctcgatgcctgacttcgacgttgacttctgtatggagaaacgcgaccaggtgattgag
cacgtcgcagacatgtacgggcgcgatgcggtatcgcagattatcaccttcggtacgatg
gcggcgaaagccgttatccgcgatgtgggccgcgtgctggggcatccgtacggttttgtc
gatcgtatctcgaagctggtgccgcccgatccgggaatgacgctggcaaaagcctttgaa
gcagaaccgcaactgccggaaatttacgaggcggacgaagaggtcaaagcgctgatcgat
atggcgcgtaagctcgaaggcgtcacgcgtaacgccggtaagcacgctggcggcgtggtc
atcgcgccgaccaaaattaccgactttgcgccgctgtactgcgatgaagagggcaagcat
ccggttacccagtttgataaaagcgacgtggaatatgccgggctggtgaagttcgacttc
ctcggtttgcgtacgctgactatcatcaactgggcgctggagatgatcaacaagcggcgc
gagaaaaacggcgagccgccgctggatatcgccgccattccgctggatgacaagaaaagc
ttcgacatgctgcaacgctcggaaaccacggcggtcttccagcttgaatcgcgcggtatg
aaagacctgatcaaacgtctgcagccggactgctttgaagatatgatcgcgctggtggcc
ctgttccgtcccggcccgttgcagtcagggatggtagataacttcatcgaccgtaagcac
ggtcgtgaagaactctcttacccggacgttcagtggcagcatgaaagcctgaagccggta
ctggagccgacctacggcatcattctgtatcaggaacaggtgatgcagattgcccaggta
ctttccgggtatactctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaag
ccggaggagatggccaaacagcgttccgtttttgaagagggcgcgaaaaagaacggtatc
gacggcgaactggcgatgaaaatctttgacctggtggagaaattcgccggttacgggttt
aacaaatcgcactccgccgcttatgcgctggtttcttaccagacgctatggctaaaggcg
cactatccggctgaatttatggcggcggtaatgaccgccgatatggataacaccgagaag
gtcgtcggcctggtggacgagtgctggcggatgggactgaaaattctgccgccggatatt
aactccggattgtaccatttccacgttaacgatgagggcgagatcgtctacggcatcggc
gcgatcaaaggcgtcggcgaagggccgatcgaagcgatcatcgacgcgcgtaatcagggc
ggctatttccgcgagctgtttgatctgtgcgcgcggaccgacaccaaaaagctcaaccgc
cgggtgctggaaaagctgatcatgtccggggcgttcgaccgcctggggccgcaccgcgcc
gcgctgatgaactcattgggcgatgcgctgaaagccgccgaccagcacgccaaagcggaa
gctatcggtcaggcggatatgttcggcgtactggcggaagagccggagcaaatcgagcaa
tcctatgccagctgccagccgtggccggagcaggtggtgttagatggggaacgtgaaacg
ttggggctgtacctgacgggccaccccatcaatcagtatttaaaagaaattgagcgctat
gtcggcggggtaaggctcaaagacatgcatccgacagaacgtggtaaagtcaccacggct
gcggggctcgtgattgccgcaagggttatggtcaccaagcgcggcaatcgtatcggcatc
tgtacgctggatgaccgttccgggcgtctggaagtgatgttatttaccgacgcgctggat
aaataccagcagttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagcttt
gatgacttcagcggggggcttaaaatgaccgcccgcgaagtgatggatattgacgaagct
cgcgaaaaatacgctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccag
cttttaaaccgactccgtcagtctctggaaccccaccgctcggggaccattccagtacat
ctctactatcagagggcggatgcgcgtgcgcggctgcgttttggcgcaacgtggcgtgtc
tctccgagcgatcgtttacttaacgatctgcgtggcctcattggttcggagcaggtggaa
ctggagtttgactaa
DBGET
integrated database retrieval system
