Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_22840
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Entry
SN31241_22840 CDS
T02779
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
senn
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Pathway
senn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
senn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SN31241_22840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
senn03400
]
SN31241_22840
Enzymes [BR:
senn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SN31241_22840
DNA repair and recombination proteins [BR:
senn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SN31241_22840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGS29257
LinkDB
All DBs
Position
complement(2324442..2327888)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD
LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD
AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaacaacgttacacgctgccgacaaaagcgggcgatcagcgccagttgggc
gaacttaccggtgccgcctgcgctacgctggtggcggagatagctgaacgccatgccggt
ccggtggtactcatagcgcctgacatgcaaaatgctctgcgattgcatgatgaaatccgc
cagtttaccgatcagatggtcatgaacctggcggactgggaaacgctaccgtatgacagc
ttctccccgcatcaggaaattatctcttcgcgtctgtccacgctctaccagttgccgtcg
atgcagcgcggcgtcttgattgtaccggtaaacaccctgatgcagcgcgtttgtccgcat
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcggctgtcccgcgacgct
ctgcgcgcgcagcttgacagcgccggttatcggcatgtcgatcaggtgatggagcatggc
gaatacgcgacgcgcggcgcgctgttggatctctttccgatgggcagcgaacagccttat
cgcctcgacttttttgatgatgaaatcgacagcctgcgtctgtttgacgcggatacccag
cgtacgctggaggaggttgaggccatcaatttgttgcccgcgcacgaatttcctaccgac
aaagccgctattgagcttttccgtagccagtggcgcgatacctttgaggtaaaacgcgac
gccgagcacatctatcagcaggtcagcaaaggcaccctccccgccgggatcgaatactgg
cagccgctctttttcagcgaaccgttaccgccattatttagctacttccccgccaatact
ctggtggtgaataccggctcgctggaaaccagcgccgaacgctttcaggccgatacgctg
gcgcgttttgaaaatcgtggcgtcgatcctatgcgcccgcttttgccgccggaagccctc
tggctacgggtggatgagctcttttccgagcttaaacgctggcctcgcctccagcttaaa
accgaccacctgccggaaaaagccgccaataccaatctcggtttccagaaattaccggat
ttggctatccaggcgcagcagaaagcgccgctggacgcgctgcgtaagttcctcgaatct
ttcagcggtccggtgattttttctgtggaaagcgaaggacgccgcgaagcgctgggagag
ctcctggcccgcataaaaatcgcgccgaagcggatattacgcctggacgaggcgcaggat
gcgggacgctatctgatgattggcgccgcagaacatggttttatcgacacccaacgcaat
ctggcgctgatttgcgaaagcgatctcctgggtgaacgggtcgcgcgtcgccgcctggat
tcccgtcgtacgatcaacccggatacgttgattcgtaacctggcggagctccacgtcggt
caaccggtagtgcatctggagcacggcgtcggacgctatgccggcatgaccactctggag
gctggcggcatcaagggtgagtatctgatgctcacctacgccaatgacgccaaactgtat
gtgccggtttcctcattgcatctgattagccgctatgccggcggcgcggaagaaagtgcg
ccgctgcataaactgggtggcgacgcctggtcgcgcgcccggcagaaagcggcggaaaaa
gtgcgcgatgtcgcagcggaactgttggatatttatgcgcaacgggcggcaaaagagggg
tttgcctttaagcatgatcgtgagcagtatcagttattctgcgacagcttcccgtttgaa
acgacgcccgatcaggcacaggcgattaacgccgtattgagcgatatgtgccaaccgctg
gcgatggacaggctggtgtgcggcgacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgcgttcctggcggtggaaaaccataaacaggtagcggtactggtgccgaccacgctg
ctggcgcagcaacactatgacaacttccgcgaccgtttcgccaactggccggtacgcatt
gagatgctgtcccgctttcgcagcgccaaagagcagacgcaaatcctggcggaagccgcc
gagggtaagatcgatattctgatcggtacgcataaactgctacaaagcgatgtgaagcta
cgcgacctcggcctgctgattgtcgatgaagagcaccgtttcggcgtgcgccacaaagag
cgaattaaggcgatgcgcgccgatgtcgatattctgacgctcacggcgacgccgatcccg
cggacgctgaatatggcgatgagcggtatgcgcgatctctctattatcgccaccccccct
gcccgtcgtctggcggtaaaaacctttgtccgcgagtatgatagcctggtggtaagggaa
gcgattctgcgtgaaatcctgcgcggcggtcaggtttactatttgtacaatgacgtcgaa
aatattcagaaagccgcagagcggctggcggaactggtgccggaagcgcgaatcgctata
ggccacgggcagatgcgtgaacgtgagctagaacgggtcatgaacgatttccaccatcaa
cgttttaacgtgctggtgtgtactaccattatcgaaacggggatcgacattcccaccgct
aacacgatcatcattgaacgcgcggatcatttcggcctcgcgcagttgcaccagctgcgt
ggccgcgttgggcgctcgcaccatcaggcctacgcctggctgttgacgccacatcctaag
gccatgaccaccgatgcgcaaaaacggctggaggcgattgcgtcgctggaggatttaggc
gccgggtttgcgctggcgacccacgatctggagatccgcggcgcgggcgaactgcttggc
gaagagcaaagcggctcaatggaaaccatcggcttctcactctacatggaattgctggaa
aacgccgttgatgcgctgaaagcaggccgcgaaccctcgctggaagatctcaccagtcag
caaacggaagtcgagctgcgaatgccgtcgttactgccggatgattttattccggatgtt
aatacccggctgtcattctataaacgcattgccagcgcgaagaacgaaaacgagctggaa
gagatcaaagtggaattgatcgaccgcttcggcctgctgcccgatccggcgcgtaatctg
ctggatatcgcacgcctgcgccaacaggcgcaaaagctcggcatccgaaaactggagggt
aacgagaaaggcggaacgattgagttcgccgagaaaaaccacgttgaccccgcctggctt
atcgggttgctgcaaaaacagccgcagcatttccgtctggatggcccgacgcgcctcaag
tttattcaggatttaagcgaacgtaaaacgcgtatagactgggtacgccagtttatgcag
caactggaagaaaacgctattgcataa
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