Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_43410
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Entry
SN31241_43410 CDS
T02779
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
senn
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Pathway
senn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
senn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SN31241_43410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
senn03021
]
SN31241_43410
Transcription machinery [BR:
senn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SN31241_43410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AGS31312
LinkDB
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Position
4391341..4393188
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AA seq
615 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTA
THVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAK
GRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
attgaagatatcatccaaatgatcaacgacatgggtattcaggtaatggaagaagcgcct
gatgccgatgatctgctgctggctgaaaataccaccagcaccgatgaagatgcggaagaa
gctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgtacgactgacccggta
cgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgggaaggcgaaatcgac
atcgctaaacgtatcgaagacgggatcaaccaggttcaatgctccgttgccgaatacccg
gaagccattacctatctgctggaacagtacgatcgcgttgaggctgaagaggctcgtttg
tccgatcttatcaccggctttgtcgatccgaacgcggaagaagagatggcgccgaccgca
actcacgtcggttctgaactctcccaggaagacctggatgatgacgaagacgaagatgaa
gaagacggcgacgatgacgccgccgatgacgacaacagcattgaccctgaactggcacgc
gaaaaattcgctgaactgcgcgcgcaatacgtcgttacgcgcgacaccatcaaagcgaaa
ggccgcagccatgctgccgcgcaggaagagattctgaagctgtctgaagtgttcaaacag
ttccgtctggtaccgaagcaattcgactatctggtcaacagtatgcgcgtgatgatggat
cgcgtgcgtacccaggaacgtctgatcatgaagctctgcgtcgagcagtgcaaaatgccg
aagaagaactttatcacgctgtttaccggtaatgaaaccagcgaaacctggttcaatgcc
gctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtcgcggaagaagtgcaa
cgctgcctgcaaaaactgcggcagattgaagaagagaccggtctgaccatcgaacaggtg
aaagacatcaaccgtcgcatgtccatcggggaagcgaaagcccgccgtgcgaagaaagag
atggttgaagcgaacttgcgtctggttatttctatcgctaagaaatacaccaaccgtggc
ttgcaattccttgatctgattcaggaaggcaacatcggtctgatgaaagcggtagataag
ttcgaataccgtcgcggctacaaattctccacctatgcaacctggtggatccgtcaggcg
atcacccgttctatcgccgatcaggcgcgcaccatccgtattccggtgcatatgattgag
accatcaacaagctcaaccgtatttctcgccagatgctgcaagagatgggccgcgagcca
acgccggaagagctggctgaacggatgctgatgccggaagataaaattcgtaaggtgctg
aagattgccaaagagccaatctccatggaaacgccgatcggcgacgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgccactaccgag
agcctgcgtgccgccactcacgacgttttggctggcctgaccgctcgtgaagcgaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgatgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgccacccgagccgttctgaagtgctgcgcagcttcctcgacgattaa
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