Serratia entomophila: KHA73_00145
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Entry
KHA73_00145 CDS
T08209
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
senp
Serratia entomophila
Pathway
senp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
senp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KHA73_00145 (pdeR)
Enzymes [BR:
senp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
KHA73_00145 (pdeR)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
GGDEF_2
RIP
Motif
Other DBs
NCBI-ProteinID:
UIW18407
LinkDB
All DBs
Position
complement(31824..33821)
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AA seq
665 aa
AA seq
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MFADQGPMLLNAHFGTSSPYWRLAFDSNALELSAVRGKAHAAVALSAMQAAKIRRLSGVT
ASLDLSIMLAGEPIHLHLVGRRINKLEWAGTASAFSDTKSVARDLVHGLSFAEQVVSEAN
SVIVIVDQHGRIQRFNRLSEEYTGLREHDVIGKNVFQLFMNPKEAAASRRNIAGFFRNGA
SYEVERWIKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEERRAQERLRVLANTDI
ITGLPNRNAIQDKITQAITARGDSNIGLVYLDLDNFKKVNDAYGHMFGDRLLVEVSLAIL
SCLTPDQVLARLGGDEFLVLVQQADRNMLQTLAQRIIDRLKTPFRIGLIEVYTGCSIGIA
LCPEHGQDLDSLIRSADTAMYVAKEHGKRTFALFSPEMNRRVAEYMWLDTNLRKGLEQNQ
LVVYYQPKIDTRSGEVHSVEALLRWDSPERGLIPPLQFISYAEESGLIGPLGQWVLQTAA
KQAAQWQMQGLNLRVAVNLSARQLADDSVVKALINIQQQHHMAPCRLDFELTESSLIEDE
TRARALIARLRELGAQVHLDDFGTGYSSLAQLARIPLDAIKLDKSFVHGVNDNPVSQSLV
RAIVAAAEALEFRVIAEGVETESENRFLDEVGVDEKQGFLFARPMPPAQLEHWLRCYRPH
PPAGA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcagaccaaggccccatgctccttaacgcccatttcggcaccagcagcccctat
tggcgtctggcgtttgacagcaatgctctggaactgtccgccgtcagggggaaggcccat
gcggcggtggcgctcagcgccatgcaggcggcaaaaatccgccgactgagcggcgtgacc
gccagcctcgatctcagcattatgctggccggtgagccgatacatctgcatctggtgggc
cggcgcatcaataagctggaatgggccggtaccgcctcggcattcagcgataccaaatcg
gtggcgcgcgatctggtgcacgggctgtcctttgccgaacaggtggtctcggaagccaac
tcggtgatcgtgatcgtcgaccaacacggccgcattcagcgcttcaaccgcctgagcgag
gaatataccggcctgcgtgaacatgacgtgatcggcaagaatgtttttcagctgtttatg
aaccccaaagaggcggcggcctccaggcgcaatatcgccggctttttccgcaacggcgcc
tcctacgaggtggaacgctggatcaaaacggtgaaaggcgagcggttgttcttgtttcgc
aacaagtttgtgcacagcggcagcggcaaaaacgaggtgttcctgatttgctccggcacc
gatattaccgaagagcggcgcgcgcaggagcggttgcgggtgctggccaataccgacatc
attaccggcctgcccaaccgcaacgccattcaggataaaatcacccaggccatcaccgcg
cgcggagacagcaacatcgggctggtatatctcgatctcgacaacttcaaaaaggtgaac
gacgcctacggccatatgttcggcgaccgcctgttggtggaggtgtcgctggcgatcctc
agctgcctgaccccggatcaggtgctggcccggctcggcggcgacgaatttctggtgctg
gtgcagcaggccgaccgcaacatgctgcaaaccctggcccagcgtattatcgatcggctg
aaaacccccttccgcatcggcctgattgaggtttataccggctgctcgatcggcatcgcg
ctgtgcccggaacacggccaggatctcgacagcctgatccgcagcgccgataccgccatg
tacgtcgccaaggagcacggcaaacgcacttttgccctgttctcgccggaaatgaacaga
cgcgtcgccgaatacatgtggctggacaccaacctgcgcaaagggctggagcaaaaccaa
ctggtggtttattaccagcccaaaatcgacacgcgcagcggcgaggtgcacagcgtagaa
gccctgctgcgctgggactcgccggagcgtgggctgatcccgccgctgcagtttatctcg
tacgccgaggaatccgggttgataggcccgctcggccagtgggtgctgcaaaccgccgcc
aaacaggcggcgcaatggcagatgcaaggcctgaacctgcgggtggcggtgaatctctcc
gcccggcagctggccgatgacagcgtcgtcaaggcgctgatcaacatccagcaacagcat
catatggcgccttgccggctggacttcgagctgacggaaagcagcctgatcgaggacgaa
acgcgcgcacgcgcgctgatcgcccggctgcgcgagctgggcgctcaggtacatctcgat
gacttcggcaccggctattcttcgctggcccagctggcgcgcattccgctggacgccatt
aagctggataaaagcttcgtgcacggggtgaatgacaatccggtgtcgcaatcgctggtg
cgcgccatcgtcgcggcggcggaggcgcttgagtttcgggtcatcgccgaaggcgtagag
accgaaagcgaaaaccgcttcctcgacgaagtgggcgtggacgaaaagcagggctttctg
tttgcgcggccaatgcccccggcgcagctggagcattggctgcgttgttatcgcccgcac
ccgccggcgggcgcgtaa
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