Serratia entomophila: KHA73_16080
Help
Entry
KHA73_16080 CDS
T08209
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
senp
Serratia entomophila
Pathway
senp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
senp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KHA73_16080 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
senp03400
]
KHA73_16080 (sbcB)
Enzymes [BR:
senp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KHA73_16080 (sbcB)
DNA repair and recombination proteins [BR:
senp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KHA73_16080 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KHA73_16080 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KHA73_16080 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UIW16949
LinkDB
All DBs
Position
3305191..3306618
Genome browser
AA seq
475 aa
AA seq
DB search
MSSKAPATFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPEPE
AVMITGITPQLARAKGVNEAEFARQIHQAFSAPGTCILGYNNIRFDDEVSRNIFYRSFYD
PYAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEEGFPSFRLEHLTRANGVEHTQAHD
AMSDVYATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGN
TSWVSPLAWHPDNKNAVIMCDLAGDMTPLLQLSAEQLRERLYTRRDELAAGQAPVPIKLV
HINKCPVLAPAKTLLPENAERLGIDRQACLQNLQLLRQHPEVREKVVALFAEAEPFKGSD
DVDARLYAGFFSDADKAAMKIIQQTKPQNLPALDLAFNDDRMKELLFRFRARNYPNTLDD
AEQRRWLQHRQEALSAERVQNYLLQLEALYNLHEDDKEKTALLKALFEYGRELAG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgagcagcaaggcaccggccacattttacattcacgactacgagaccttcggcaaaagc
ccctcgctggatcgcccggcgcagtttgccggcgtgcgcaccgatatggatttcaacatc
atcgaagaaccgctggtgatctactgctccccggcagacgattacctgccggaacccgag
gcggtgatgatcaccggcatcacgccgcagctggcgcgggccaaaggcgtgaacgaagcg
gagttcgcgcgccaaatccatcaggccttcagcgcgccgggcacctgcattctgggctac
aacaatatccgcttcgatgacgaagtcagccgtaatattttctaccgcagtttctacgat
ccctacgcctacagctggcagaacggcaactcgcgctgggatctgctggacgtcatgcgc
gcctgctacgcactgcgcccggacggcatcgtctggccggagaacgaagaaggcttcccc
agcttccgcctggaacacctgacccgcgccaacggcgtcgagcatacccaggcgcatgac
gccatgtcggacgtttacgccactatcgccatggccaagctggtcaagcaggcgcagccg
cggctgtttgattttctgctgcagcaccgcaacaagcacaagctgaatgcgctgatcgac
atcgccgaaatgaccccgctggtgcatgtttccggcatgttcggcgcggcgcgcggcaat
accagctgggtttcgccgctggcctggcacccggacaacaaaaacgcggtcatcatgtgc
gatctggccggcgacatgacgccgctgctgcagttgagcgcagaacagctgcgcgagcgg
ctgtatacccgccgcgatgagttggccgccggccaggcgccggtgccgatcaagctggtg
cacattaacaagtgcccggtgctggcgccggcgaaaaccctgctgccggaaaatgccgag
cggctgggcatcgatcgccaggcctgcctgcaaaacctgcagctgctgcgccagcatccg
gaagtgcgggaaaaggtggtggcgctgtttgccgaagccgagccgtttaaaggttccgat
gacgttgacgcccggctgtacgccgggttcttcagcgatgccgacaaggcggcgatgaaa
atcatccagcagaccaagccgcagaacctgccggcgctggatctggcgttcaacgacgat
cgcatgaaagagctgctgttccgattccgtgcgcgcaactaccctaatacgctggacgac
gccgagcagcgccgctggctgcagcaccgccaggaagcgctgagcgctgagcgggtgcaa
aattacctgctgcagttagaagccttgtataacctgcacgaagacgacaaagagaagacc
gcgctgctgaaagcgctgtttgaatacggccgcgagctggcgggttag
DBGET
integrated database retrieval system
