Serratia entomophila: KHA73_20015
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Entry
KHA73_20015 CDS
T08209
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
senp
Serratia entomophila
Brite
KEGG Orthology (KO) [BR:
senp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senp03019
]
KHA73_20015 (hrpB)
Enzymes [BR:
senp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KHA73_20015 (hrpB)
Messenger RNA biogenesis [BR:
senp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KHA73_20015 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
AAA_22
DUF2934
ResIII
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UIW17681
LinkDB
All DBs
Position
complement(4140859..4143297)
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AA seq
812 aa
AA seq
DB search
MSSLPVSAVLDELLTALQSAPQVLLHAPTGAGKSTWLPLQILAKAGLPGRIIMLEPRRLA
AKNVAYRLAQQLGEEPGQTVGYRMRAESKSGPQTRLEVVTEGILTRMLQQDAELQGVSLV
ILDEFHERSLQADLALALLLDVQQGLREDLKLLIMSATLDNARLAQLLPQAPAVVSEGRS
FPVDRQYQPLASHQRLEDGVAAAVKRLLAEQPGSLLLFLPGVAEINRVLERLNGELPGDT
DLCPLYGALPLAQQQKAIQPAQAGRRKVVLATNIAETSLTIEGIRLVIDSGLERVARYDV
RNGLTRLVTQRISQASMVQRAGRAGRLEPGICWHLFAKEQAERAAEHAEPEILQSDLAGF
WLELLQWGCHDAAQLTWLDRPPAPALAAAKGLLRRLGATDEGDKLSAQGRQMAALGCEPR
LAAMLAAGAALGAEGVATAAALAALLEEPPRGGQMDIGYWLSRPQPNWQRRAAQLTRRLA
QRPGQVDADLAPRLLALAFADRIGQRRGQDGRYLLANGMGAAMNQDEALSRAPWLIIPSL
LQGHNSPDARILLALPVEIDALAAQLPAIVSQQTAVEWDEEKGTLRAWKRQQIGRLTLRA
QPLAKPADEELQQALIGWVRSQGLAVLNWDTAAEQLRVRLQCAQRWLPEAAWPPVDDESL
LDALERWLLPSLNGVRDLRGLKQVNIAEALARLLDWQQKQRLDNALPTHYTVPTGSRLPI
RYDAGKPPALAVRLQEVFGEQRSPMLAEGRIPVVLELLSPAHRPLQITGDLAAFWQGAYR
EVQKEMKGRYPKHVWPDDPANTAPTRRTKKYQ
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttcactgcccgtcagcgcggtacttgatgagttgctcactgcgctgcaatccgcc
ccgcaggtcttgctgcacgccccgaccggcgccggcaaatccacctggctgccgctgcag
atcctggctaaagccggcttgcccggccgcatcatcatgctggagccgcggcggttggcg
gcgaaaaacgtcgcctaccggctggcgcaacagctgggtgaagaacccggccaaaccgtg
ggctaccgcatgcgcgccgaaagtaaaagcgggccgcagacccggctggaagtggtgacc
gaaggcattctcacccgcatgctgcaacaggacgccgagctgcagggcgtctcgctggtg
atcctcgacgaatttcacgagcgcagcctgcaggccgatctggcgttggcgctgctgctc
gatgtgcaacaggggctgcgcgaagatctgaagctgctgatcatgtcggcgacgctggac
aacgcccggctggcgcagctgctgccgcaggcgccggcggtggtttccgaagggcgcagt
ttcccggtcgatcgtcaatatcagccgctggccagccatcagcggctggaggacggcgtg
gcggcggcggtgaagcgtttgttggccgaacagccgggctcgctgctgctgttcctgccg
ggcgtggcggaaatcaaccgggtgctggaacgcctcaacggcgagttgcccggcgatacc
gatctgtgcccgctgtatggcgccttgccgctggcgcagcagcagaaagcgatccagccg
gctcaggccgggcggcgcaaggtggtgctggcgaccaatatcgccgagaccagcctgacg
attgaaggtatccgcctggtgatcgacagcgggctggagcgggtggcgcgctatgacgtg
cgcaacggcctgacgcgcctggtgacgcaacgcatcagccaggcctcgatggtgcagcgc
gccggccgcgccgggcgtctggagccgggcatctgttggcatctgttcgccaaagagcag
gcggagcgtgcggcggagcatgccgagccggagatcttgcaaagcgatttggccggcttc
tggctcgagctgctgcagtggggctgccacgatgcggcccaactgacctggctcgatcgg
ccgccggcgccggcgctggcggcggccaaagggctgctgcgccggcttggcgccacggac
gagggcgataagctcagcgcgcaggggcgccagatggccgcgctgggctgtgagccgagg
ctggcggcgatgttggccgccggtgctgcgctgggcgccgagggggtggcgacggcggcg
gcgttggccgcattgctggaggagccgccgcgcggcgggcagatggatatcggctattgg
ctgagccggccgcagccgaattggcagcgtcgcgccgcccagctgacgcgccgccttgcg
cagcggccggggcaggtcgatgccgatttggcgccgcgcctgctggcgctggcgttcgcc
gatcgcatcggccagcggcgcgggcaggatggccgttatctgttggccaacggcatgggc
gcggcgatgaatcaggatgaagcgttgtcgcgtgcgccctggctgattatccccagcctg
ctgcaggggcataacagcccggatgcgcgtattctgctggcgttgccggtggagatcgac
gcgctggcggcgcagctgccggcgatagtctcgcagcaaacggcggtggagtgggatgaa
gaaaagggcacgctgcgcgcctggaagcgccagcaaattggccgcctgacgctgcgcgcc
caaccgctggccaagccggcggatgaagaactccagcaggcgctgatcggctgggtgcgg
tcgcaggggttggcggtgctcaactgggacaccgccgccgagcagctgagggtgcggctg
cagtgtgcgcagcgctggctgccggaggccgcctggccgccggtggacgatgaatcgctg
ctggacgcgctggagcgctggctgctgccttcgctgaacggcgtgcgcgatctgcgcggg
ttgaagcaggttaatatcgccgaggcgttggcccgcttgctggactggcagcaaaagcag
cggctggataatgccttacccactcattacactgtgccgaccggcagccgcctgccgatc
cgttatgacgccggcaaaccgcccgcgctggcggtgcgtttacaggaggtgtttggtgaa
cagcgcagcccaatgttggctgagggtcgcatcccggtggtgcttgagttactctcaccg
gcgcaccggccgctgcaaatcaccggcgatctggccgcattttggcagggcgcctatcgc
gaggtgcaaaaagagatgaaggggcgctatccgaaacacgtgtggcccgacgacccggcc
aataccgccccgacgcgccggaccaaaaagtaccagtga
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