Salmonella enterica subsp. enterica serovar Enteritidis EC20090531: AU40_22780
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Entry
AU40_22780 CDS
T03761
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
senq
Salmonella enterica subsp. enterica serovar Enteritidis EC20090531
Pathway
senq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
senq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AU40_22780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
senq03021
]
AU40_22780 (rpoB)
03400 DNA repair and recombination proteins [BR:
senq03400
]
AU40_22780 (rpoB)
Enzymes [BR:
senq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AU40_22780 (rpoB)
Transcription machinery [BR:
senq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AU40_22780 (rpoB)
DNA repair and recombination proteins [BR:
senq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AU40_22780 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AHR21502
LinkDB
All DBs
Position
4238099..4242127
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNVRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaagtttatcgag
caagatcctgaagggcagtacggcctggaagcagccttccgttccgtgttcccgattcag
agctacagcggtaattccgagctgcagtacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtgcgtatcgaccgt
cgccgtaaactgcctgcgaccatcatcctgcgtgcgctgaactacaccactgagcagatc
cttgacctgttctttgagaaagtcgtcttcgaaattcgcgacaacaaactgcagatggag
ctgattccagaacgtctgcgcggcgaaaccgcgtcgttcgatatcgaagctaacggcaaa
gtgtacgttgaaaaaggccgtcgcattaccgcgcgtcacatccgtcagctggaaaaagac
gatatcaagcatatcgaagttccggttgagtacatcgcaggtaaagtcgtctctaaagac
tacgttgacgaatccactggcgagctgatctgcgcggcgaacatggagctgagcctggat
ctgctggctaagttgagccagtccggccacaaacgtatcgaaacgctgtttaccaacgat
ctggaccacggcccgtacatttctgaaacggtacgcgtcgacccaaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgactcgtgaagcg
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctatgacctgtctgcggtg
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgtcatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgcc
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgc
gaacgcgcaggcttcgaagttcgagacgtacacccgacgcactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatatggcttccttgagacgccgtaccgtcgtgtggttgatggcgtggtcact
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggtgacctgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtttccacccagcaggtg
gtctccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgacaagccgctggtg
ggtaccggtatggaacgtgctgtcgccgtcgactccggtgttactgcagtagctaaacgt
ggcggtactgttcagtacgtggatgcgtcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggtgaagcaggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccatgtgtgtctctgggcgagccggttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacgtg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggcgcggaagtgaccggcggc
gacattctggtcggtaaggtgacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
cctaacggtgtctccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgctctggaaatcgaagagatgcagctcaagcaggcgaaaaaagacctg
tctgaagaactgcagatcctcgaagcgggcctgtttagccgtatccgtgcggtgttggtg
tccggcggcgttgaagctgagaagctcgacaaactgccgcgcgaccgctggctggaactc
ggtctgaccgacgaagagaaacaaaatcagctggaacaactggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaacttgaagcgaagcgccgtaaaatcacccagggcgac
gatctggcgccgggcgtgctgaagatcgtgaaggtctatctggccgttaaacgccgtatc
cagccgggtgataagatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagacatgccttacgatgaaaacggcacgccggtcgacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtattggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcctacgatctgggcgccgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgatgaagtgctgcgtctggcagaaaacctgcgtaaaggtatg
ccgattgccacaccagtgtttgacggtgcgaaagaagcggaaatcaaagagctgctgaaa
ctgggcgacctgccgacctccggtcagatcaccctgttcgatggccgtacgggtgaacag
ttcgaacgtccggtaaccgtcggttacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagct
tacggcgccgcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaatggt
cgtaccaagatgtataagaacatcgtggacggcaaccatcagatggaaccgggtatgccg
gaatccttcaacgttctgttgaaagagatccgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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