Salmonella enterica subsp. enterica serovar Typhimurium DT2: STMDT2_34061
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Entry
STMDT2_34061 CDS
T02869
Symbol
rtcB
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
senr
Salmonella enterica subsp. enterica serovar Typhimurium DT2
Brite
KEGG Orthology (KO) [BR:
senr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
senr03016
]
STMDT2_34061 (rtcB)
Enzymes [BR:
senr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
STMDT2_34061 (rtcB)
Transfer RNA biogenesis [BR:
senr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
STMDT2_34061 (rtcB)
Prokaryotic type
tRNA splicing ligases
STMDT2_34061 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CDG09561
LinkDB
All DBs
Position
complement(3639788..3641005)
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AA seq
405 aa
AA seq
DB search
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRD
VGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDR
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggc
gtaccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttatt
ttcaaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagc
gtgatcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtgga
atgaacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggatctg
cgtagcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcatcgcgat
gtgggcgcatggggaaacccgcccgccaacgttaatgaaaaatgggcgcaactggaagcg
ggatatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcac
ctgggaacgttgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgg
gtatggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctatttt
atcggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctg
gcgtattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggca
caacaattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccag
cgctgcgtggaaaaaccgatcgccctcgatatggacgagatcaactgccaccataactat
gtgcaaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggctgtttcg
gcgcggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtg
cgcgggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccggacgtgtgatg
agccgaacgaaagcgaagaaactgtttagcgttgacgatcaaattcgtgccaccgcgcat
gtcgaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatatt
gatgcggtgatggcggcgcagtccgacctggttgaaatcatgtacgccctgcggcaggtg
gtgtgcgttaaaggatag
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