Salmonella enterica subsp. enterica serovar Agona 24249: Q786_20355
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Entry
Q786_20355 CDS
T02944
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sens
Salmonella enterica subsp. enterica serovar Agona 24249
Pathway
sens03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sens00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q786_20355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sens03021
]
Q786_20355
03400 DNA repair and recombination proteins [BR:
sens03400
]
Q786_20355
Enzymes [BR:
sens01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q786_20355
Transcription machinery [BR:
sens03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q786_20355
DNA repair and recombination proteins [BR:
sens03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q786_20355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
AHB46637
LinkDB
All DBs
Position
4254146..4258369
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
TPQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcgtctccgactgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcttatgtggttatcgaaggcggtatgaccaacctggaacgtcaacagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagccttcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaaacaaggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaattgcgtggccttgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagccgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgtggtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgcaggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatatgaaaaagatgaaaac
ggcgaattcgttgcgcacaccagcctgaaagacacgaccgttggtcgcgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacttgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcgtctgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatttctgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggccaggaagagcagcaggtctccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtttggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtcgcgcaggatctggtggtgaccgaagatgactgtggtacgcacgaaggtatc
ctgatgaccccggttatcgagggtggcgacgtgaaagagccgctgcgtgaccgcgttctg
ggtcgtgtgacggcggaagatgtgctgaaaccgggtaccgcggacattctggttccacgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcaaactccgttgacgccgtt
aaagtgcgttccgttgtatcctgcgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttatggc
gctgtcatggcgaaaggtgatggcgagcaggttgccggcggcgaaaccgtggcaaactgg
gacccgcacaccatgccggttatcaccgaagtgagtggtttcatccgcttcactgacatg
atcgacggtcagaccattacgcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gttctggattcggctgaacgtactaccggtggtaaggatctgcgtccggcgctgaaaatc
gttgatgctcagggtaatgacgttctgatcccgggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatatcactggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagccggccattctggcggaaatcgca
ggtatcgtttccttcggtaaagaaaccaaaggcaaacgtcgtctggtaattacgccggtt
gatggtagtgacccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggggagcgtgtagaacgtggtgatgtgatttccgatggtccggaagcgccgcacgacatt
ctgcgtctgcgtggcgttcatgctgtgacgcgttacatcgttaacgaagtccaggatgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagctaccatcgaaagcgccggtagttccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgctaaccgcgagctggaagcgaatggcaaagtgggggct
accttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggccttaaagagaacgttatcgtgggtcgtctgattccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgcgggcgagcagccagca
acaccgcaggtcactgcggaagatgcatctgccagcctggcagaactgctgaacgcaggt
ctgggcggttctgataacgagtaa
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