Salmonella enterica subsp. enterica serovar Enteritidis EC20090332: AU39_00965
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Entry
AU39_00965 CDS
T03760
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
senv
Salmonella enterica subsp. enterica serovar Enteritidis EC20090332
Brite
KEGG Orthology (KO) [BR:
senv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senv03019
]
AU39_00965
Enzymes [BR:
senv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AU39_00965
Messenger RNA biogenesis [BR:
senv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AU39_00965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHP76943
LinkDB
All DBs
Position
220130..222559
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AA seq
809 aa
AA seq
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MTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQGPVAGKILLLEPRRLA
ARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLTRMIQRDPELRGVGLV
ILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLDNDRLCQRLPDAPTIVSEGRA
FPVERRYQPLAAHLRFDEAVAMATAELLRNENGSLLLFLPGVGEIQRVHEHLASRVGSDV
LLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDA
RTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAAAQSDPEILHSDLSGL
LMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLMLGALEGERLSARGRKMAATGNDPRL
AAMLVNAGEGDSAATAAMLAAILEDPPRGGGTDLSVVFSRRQPGWQQRSQQLLKRLQVRN
GEPDSALIMPLLARAFSDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQG
SASPDARILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVSVQPL
AKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLPEYDWPAVDEASLLAT
LENWLLPHMTGVQSLRSLKSLNVTQALRGLLDYAMLQRLDSELPGHYTVPTGSRITIRYH
EDNPPALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtcattgcccgttgccgccgtattgcctgaattgttgacagccctaaaaaccgcg
ccgcaggttttgttgtccgcgcctaccggggcggggaaatccacctggctgccgttgcaa
ctcctgcaacaggggccggttgctggaaaaatccttctgcttgaaccgcgtcgtctggcg
gcgcgtaatgtcgcgcagcgtctggcggaagcgttgaatgaaaagcctggcgaaacggta
ggttaccggatgcgcgcgcaaagctgcgtggggccgcgtacccggctggaagtggtgaca
gaaggcgtattgaccagaatgattcagcgcgatcccgaattacgcggcgtggggctggtg
atactggatgaatttcatgagcgcagtttacaggcggatttagcgttagcgctgttgctg
gatatccagcaagggctccgtgacgatctcaggctgttaatcatgtctgcgacgctggat
aacgacaggctttgtcagcgactgcctgatgcgccgacgatcgtctcggaggggcgcgcg
tttcccgtggagcgacgttatcagccgcttgcggcgcatttgcgttttgatgaagccgtc
gcgatggcgacagcggaactgctgcgcaatgaaaacggttcgctgctgctatttttaccc
ggcgtaggcgaaatacagcgcgttcatgaacatctggcgtcgcgggtaggcagcgatgtc
ctgctttgtccgctgtatggcgcattgtctctggaagcgcaacgcaaagcgattgttccc
gcacccgccgggatgcgtaaagtggtattggcgactaacattgccgaaaccagtttgacg
attgaagggattcgtctggtcgtcgatagcgctcaggagcgcgtggcgcgatttgacgcg
cgaacgggactgacgcggctggttacgcagcgtatcagtcaggcgtcaatgacgcagcgc
gcggggcgcgccggacgactggcgccgggtatctgtttacatctgctggccaaagaacag
gcggagcgggcggcggcgcaaagcgatccggaaatcttacacagcgacctttccggttta
ttgatggaggtgttgcagtggggatgtcacgatccggcatcgcttttctggctggacagg
ccgccggaggtgaatcttcaggccgcccgccgtttattattgatgttaggcgcgctggag
ggcgagcggttaagcgcgcggggccggaaaatggcggcaacaggtaacgatccgcgcctg
gcggcgatgttagtcaacgccggcgagggcgatagcgccgccactgccgccatgctcgcg
gccatccttgaggacccgccgcgcggcggcggtacggatttaagcgtagtattttcgcgg
cgacagccgggctggcagcagcgtagccagcagcttttaaaacggctgcaggtgcgtaat
ggcgagccggatagcgcgcttattatgccgctgttggccagagcgtttagcgaccgcatc
gcgcggcgtcgtggtcaggaagggcgctatcagttagccaatggtatgggcgcgatgtta
gatgcggatgacgcgttgggacgtcatgaatggctgatcgcgccgctgttactgcaaggt
agcgcctcgccggacgcccgaatattgttggcgcagccgctggatattgcctcgctgatt
caggcgtgtcctgatttactgcgccagtccgacacggttgaatgggacgaggcgcaggga
acgttgaaagcatggcgcagaatgcgtattggacagttgacggttagcgttcagccactg
gcgaagccgtctgaagaggagcttcatcaggcgatgctgaacggcatccgcgataaaggt
ctgtccgtccttaactggacgccggaagcggagcagttccgtctgcgtctgcactgtgcg
gcgaaatggctgccggaatatgactggcctgccgtggatgaggcgtcgctgctggcgact
ctggaaaattggttgctgccgcacatgacaggcgtacagtcgttacggagtctgaaatct
ctgaatgtgactcaggcgttacggggactgcttgactatgccatgctgcaacgtctggat
agtgaactgcctgggcattacactgtgccgacgggaagccgaataacgattcgttatcat
gaagataacccgcccgcgctggcggtcagaatgcaggaaatgtttggcgaagcgaagacc
ccaaccatcgctcagggccgcgtgccgctggtgctggaactgctttcgccagcgcagcga
ccgctacagattacgcgcgatttaagcgctttctggcagggggcgtatcgcgaagtgcaa
aaagagatgaagggccgttaccccaaacatgtctggccggacgatccggcgaatacggcc
ccaacgcggcgcacgaagaagtattcgtga
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