Sodalis endosymbiont of Henestaris halophilus: HBA_0044
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Entry
HBA_0044 CDS
T05311
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
seny
Sodalis endosymbiont of Henestaris halophilus
Pathway
seny03030
DNA replication
seny03430
Mismatch repair
seny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBA_0044 (dnaE)
03430 Mismatch repair
HBA_0044 (dnaE)
03440 Homologous recombination
HBA_0044 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seny03032
]
HBA_0044 (dnaE)
03400 DNA repair and recombination proteins [BR:
seny03400
]
HBA_0044 (dnaE)
Enzymes [BR:
seny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HBA_0044 (dnaE)
DNA replication proteins [BR:
seny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HBA_0044 (dnaE)
DNA repair and recombination proteins [BR:
seny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HBA_0044 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
SNC58322
UniProt:
A0A2C8CW79
LinkDB
All DBs
Position
I:67002..70484
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AA seq
1160 aa
AA seq
DB search
MGEPRFIHLRVHSDYSMIDGLAKVSLLVKKAAALHMPALAITDFTNLCGLIKFYCSAHSN
GIKPIIGADFFMQSKMLGDEITELTILATNNAGYQNLTLLISDAYKRGYSNVGPVIDRDW
LIQHNEGLILLSGARKGDVGKYLTRGNIHQAKHCVSFYERYFPDRYYLELIRTGRTDEEN
YLHAAVELATCRGLPVVATNDVRFISSDDFDAHEIRVAIHDGFTLDDTKRPRNYSQQQYM
RSEKEMCELFVDLPEALANSVEIARRCNMPIRLGEYFLPHFPTGEMSTEDYLVKCAHAGL
EERLSVLFPDVDIRNNNRLTYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGASSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDLDIDFCMEKRDLVIDHVAE
TYGREAVSQIITFGTMTAKAVIRDVGRVQGHSYGFVDKISKLVPSDPGMILEKALIVEPR
LQAIYDNNKEVKTLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPIYCDPEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWTLEMVNARRASQNLDPIDISAISLEDKKSFNLL
QRYETTSVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIKWQHSSLQPVLESTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRKIFKAGAESIGIDAELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADIDNLEKVVLLVDECLRMGLKVLPPDINNGKYRFYVNEEGEIVYGIGAIKG
VGEGPIKEIIKARNQDGHFRGLFDLCARTDIKKLKRRALEKLIMSGACDCLGLHRAALMN
ALDDALKAADQHAKAEAIGQSDMFGMLTKKPETAKATYSTIEPWPDKVVLERERATLGLY
LTGHPINQYLREIEHYVGGVRLKDMHPTKRGTMVIAAGIVLSARVMITKKGNKIGVCTLD
DHSGRLDVILFTDELKKYQNLLEKNRILIAQGQISFDNFNGILIMIGKKLMDINTAREKY
ASGLAISLTERQIDNQFLKRLCLSLKSHRLGRVPVHLYYKRQDARERLQFGTSLRVRPTD
RLMNDLRTLVGNEQVELEFN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaccacgttttattcacctacgagtacacagcgactactctatgatcgacggc
ctagcaaaagtcagtctgttagtaaaaaaagccgcggcactacatatgccagcactagct
attacagattttactaatttatgcggactaattaaattttattgcagtgctcatagcaat
ggcattaagcctatcatcggtgcagatttttttatgcaaagcaaaatgctaggcgatgaa
ataacagaattgactattctagctactaataatgcaggataccaaaatctaaccctgcta
atttcagatgcctacaaaagggggtacagcaacgtcgggccagtaatcgatcgcgactgg
ctaattcaacataacgagggattaattctgctatccggagcacgtaaaggagatgttggc
aaatatttaactcgaggaaatatacaccaggctaaacattgcgtatcgttctacgaacgc
tatttcccggatcgctattatctagaacttatccgcactggtcgaacagacgaagaaaat
tacttacacgccgcagtggagctggcaacgtgcaggggtttgccggtggtggcaactaac
gatgtgcgatttatcagctcagatgatttcgatgcccacgagatccgagtagcaattcat
gatggctttaccctagatgacaccaaacgaccacgcaattatagtcagcagcaatatatg
cgcagcgagaaggaaatgtgcgaattgttcgttgacctgccggaagctctagctaatagc
gtagaaatcgctcggcgctgcaatatgcctatccgcctcggggaatattttctaccacat
ttcccgaccggcgaaatgtctactgaggattatctagtcaaatgcgcacacgcaggctta
gaagaacgactatctgtgctgtttcccgatgtagatatacggaacaataatcgcttaacc
tacgacgaacgtctgaatattgagctccaggttataaaccagatggggttcccgggttac
ttcctaatagtaatggaatttatccagtggtctaaagacaacggtataccggtcggtcct
ggacgtggctccggcgctagttcgctagtagcttatgcgctaaaaatcaccgaccttgac
ccactcgcgtttgatctactatttgaacgttttctaaatccagaacgagtatctatgcca
gacttggacatcgacttctgcatggaaaaacgagatctggtgattgaccatgtagccgag
acctacggccgtgaagcggtttcgcaaattataacctttggcaccatgacagctaaagca
gtcatccgtgatgttggcagagtacagggccattcttacggctttgtagataaaatttcc
aaattagtgccgtctgatcccggcatgatactagaaaaagctttaatcgtagaaccgaga
ttgcaggctatctatgataataacaaagaggtaaaaacactgattgatatggcccgcaag
ctggaaggggtcacgcgcaacgcaggaaaacacgctggcggtgtggtaatcgccccgact
aaaattacagattttgcgcctatttattgtgatccagaaggcaaccatccggttacccag
tttgataagaacgatgtggagtatgctggtttagtaaagtttgacttcctcggtctgcgc
acactgactatcatcaattggacgttagaaatggttaacgcccgacgcgctagtcaaaat
ttagaccccatcgatatatccgctatttcgctagaggataagaaaagcttcaatctactg
caacgctacgaaaccacctcggtattccaattggaatcacgcggcatgaaagatctaatt
aaacgtttgcaaccagattgtttcgaagatatgattgccttagtagcactattccggccc
ggaccgctgcaatcaggtatggtcgataactttatagaccgcaaacacggccgtgaagct
atctcttatcccgatattaagtggcaacattcctcgctacaacctgttctagaatcaact
tacggaattatcctttaccaagaacaagttatgcaaatagctcaaatactggctggctat
actttaggcggcgctgatatgctacgtcgcgcaatgggaaaaaaaaaaccagaagaaatg
gccaaacaacgcaaaatatttaaggcaggcgcggaaagtatcggcattgatgccgaacta
tcgatgaaaatatttgatttagtagagaaatttgctggctatggttttaataaatctcac
tctgccgcctatgcgttagtatcatatcaaacactatggttaaaagcccattatcccgct
gagttcatggcagcagtaatgactgccgatatagataacctcgaaaaggtcgtattgttg
gttgacgaatgtctgcgcatgggcttaaaagtactaccgccagatattaataatggaaag
tatcgtttttacgttaatgaagagggtgagatagtttacggcatcggcgccatcaaaggc
gtaggagaaggacctattaaagaaattatcaaagcacgtaatcaggatggtcattttcgt
ggactgtttgatttatgtgcacgcactgatatcaaaaaactcaaacgccgcgcgctggaa
aagctaattatgtctggtgcttgcgattgcctaggactacaccgtgcagcgctgatgaat
gctctcgatgacgcgcttaaagcagccgatcaacatgccaaagcagaagcaattggtcaa
agcgatatgtttggtatgttaacgaagaagccggaaacagcaaaagctacatacagtact
atcgaaccttggccagataaggtggtattggaaagagaacgtgcaacactaggcctttat
ttgacagggcatcctattaaccaatatctgcgtgagattgaacactatgtgggcggagtg
cgcctaaaggatatgcatccgactaaacgtggcacgatggttatcgcggcggggatagtg
ctgtcagctcgagtaatgatcactaaaaaaggtaataaaattggtgtatgtacactagac
gatcattccggccgactagatgtgatcttgttcacggatgagctcaaaaaataccagaat
ttactcgaaaaaaaccgtattcttatcgctcagggacaaattagttttgataatttcaac
ggtatattaataatgatcggaaaaaaattaatggatattaacacagcacgtgaaaaatat
gcaagcgggcttgctatctcgctaaccgaaaggcaaattgataaccagtttctaaagcgc
ctctgtttatcgttaaaatcgcatagattaggtagggttccagtgcatctttattataaa
cgacaagatgcgcgagagcgtttgcagtttgggacatctttacgagtcagaccgacagat
cgtttaatgaacgatttgcgcacacttgtaggtaatgaacaagtggaactagaatttaat
taa
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