Sodalis endosymbiont of Henestaris halophilus: HBA_0399
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Entry
HBA_0399 CDS
T05311
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
seny
Sodalis endosymbiont of Henestaris halophilus
Pathway
seny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBA_0399 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seny03019
]
HBA_0399 (rne)
03009 Ribosome biogenesis [BR:
seny03009
]
HBA_0399 (rne)
Enzymes [BR:
seny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HBA_0399 (rne)
Messenger RNA biogenesis [BR:
seny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HBA_0399 (rne)
Ribosome biogenesis [BR:
seny03009
]
Prokaryotic type
rRNA processing factors
HBA_0399 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
SNC58654
LinkDB
All DBs
Position
I:complement(674086..677304)
Genome browser
AA seq
1072 aa
AA seq
DB search
MKRMLINASQQEELRVALVDGQRLYDLNIESPGHQQKKANIYKGKITRIEPSLEAVFVDY
GAQRHGFLPLKEISHEYFPLEYYIHGKTNIKDMLREGQEIIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRIELKEILSSLELPDGMGLIVRTAGVGKSADEL
QWDLAFRLKHWQAIKKVAEGRPAPFLIHQESNVIVRAFRDYLRSDIGEILIDNPKILDLA
KEHIASLGRPDFIGKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NCLRESVRQDRARIQIGRISRFGLLELSRQRLSPSLGESSHHVCPRCGGTGTIRDNGSLS
LSILRLIKEEALKENTHEVHAIVPVPIASYLLNEKREAINAIEKHQGGVRAIIVPNDQMQ
TPHYAVLRVRKGEEAPTLSYLLPQLHEAEIIHPPEALSTGRKRPQQPALATFVMSNPPLI
SEKRTADETAVYTTSANAKEITSNSLGLLARLITSFKSLISAPMQQPETNSAETVIQEST
TEIDTPRLQTRKNRRSQRRQNYRSENNNEPTCVGTENCQTKKSRADSRDDKPIKRLHDVT
ETQTMRNMIGEIRQEEKVQQPCYELRQYCQQPPQQKLKIQQNADQKIKTTLQPVRLIPAN
NNETKSSVTSHNEVMEIHDGYTVIGTKGKKNVKDKRHGNEDNIPKRFRRIINHLHNTAQR
RRCYRDELYSHPSQQVLITSTTMEPKMNSGKSCMSYLASHIKHPKQNTDTDAALHHAQKD
FTVITSGEVEVAIVSNTLINQQLPQSMIVPLVPSHKQDTSTNAVKPVNTPDKQQLAQCKI
QPSTFPDSCDISSTAKKNIVPVDPRDEAYNNAIHSNKTEPLSVNPRNVKRVAYSISSTVT
VAPNENYGISQVIPSLVTQDTTFYTSPPVGLPLTQEKYPSLTMKQTTISRFKHHASAPMT
KASAPIYTPSSLPNSDWQRPNYCFNGRGAAGGHAADKQAAAPAIRPTALDPL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaagtcaacaggaagagttgcgcgttgctctagtagat
ggccaacggctgtatgatcttaatattgaaagccccgggcatcagcagaaaaaagccaac
atttacaagggtaaaataactcgtattgaaccaagtctggaagcagtatttgtagattat
ggcgcccagcgccacggttttcttccccttaaggaaatttcccacgaatattttcctctt
gaatattatattcacggcaaaaccaacatcaaagatatgctgcgagaaggccaggaaatc
atcgtacaagtggataaagaagaacggggtaataaaggcgcggcactgacaacctttatt
agcctagctggcagttatctagtgcttatgccaaacaatccacgagcaggcgggatttcg
cgtcgcatcgaaggcgacgaccgtatagaattaaaagaaatactttcctcccttgaacta
cctgacggtatggggctcatagtccgcactgcgggtgttggtaaatcagctgatgagctg
caatgggatcttgcttttcgtctcaaacattggcaggcaattaaaaaagtcgccgaaggc
cgcccagcaccgtttttaattcatcaagaaagtaatgttattgttcgcgctttccgcgat
tatttacggtctgatattggagaaatcctaattgataatcctaagattcttgacctagca
aaagagcatattgcgtcgcttggccgccctgattttataggcaaaattaaactttacagc
ggtgaaattcctctctttagtcattaccagatagaatcccagattgaatcagcatttcag
cgtgaagtgcggttaccatccggaggctctattgttattgacaccaccgaggccttaacc
gccattgatattaactctgcgcgttcaacccgcggcggcgatatcgaagaaaccgctttt
aataccaaccttgaagcagccgatgaaatcgcacgtcagctgcgcctgcgagacctggga
ggtttaattgtaatcgactttatagatatgacgccagtacgtcaccagcgtgaagtggaa
aactgcctgcgcgagtcagtacgccaggaccgtgctcgcatacaaattggccgcatctcc
cgctttggcctgctagaactctcccgtcagcgtttaagcccatcactaggtgaatctagc
catcatgtttgcccacgctgcggtggcaccggtactatccgtgataatggatctctttcc
ctttctatattaaggcttatcaaagaagaagctctaaaagagaatacccacgaagtgcat
gccatagtaccagttcccatcgcttcttatttattgaatgaaaaacgcgaagccataaat
gcaatcgagaaacaccaaggtggtgtaagagcaattatagtaccgaatgatcaaatgcaa
actccgcattacgcagttctacgtgttcgcaagggcgaagaggcccctaccctaagctat
ttattgccgcaattacatgaggcagaaataatccatccgcctgaggcactatcaacaggg
cgtaaacgcccccagcaacctgccctggcaacttttgtaatgtctaatccgccgcttatc
agcgaaaaacggactgctgatgaaactgcagtatacacgacttcagccaacgctaaggaa
atcacgagcaattcccttggcttgcttgcccgcttgatcactagcttcaaatcattaatc
agtgcaccaatgcaacaaccggaaaccaattccgctgaaacagtcattcaagagtcgact
accgaaattgacacaccgcgactccaaacgcgtaagaatcgccgcagtcaacgccgacaa
aattaccggagcgagaacaataatgaaccgacttgcgttggtacggaaaattgccagacg
aaaaagagccgtgctgatagtcgtgacgataagccaattaagcggctccatgacgtcaca
gagacacaaactatgcgtaatatgattggcgaaatacggcaagaagagaaagtacaacaa
ccgtgctatgaactacgtcaatattgtcaacagccaccccagcagaaactaaaaatacaa
caaaatgctgatcaaaagataaaaacaacgttacagcccgttcggttaatacctgctaat
aataacgagacaaaaagttccgttacctcacataatgaggtgatggaaatacacgatggc
tatactgttatcggtacgaaaggcaagaaaaacgtcaaagacaaacgacatggcaatgag
gataatataccgaaacgcttccgtcgtatcattaatcacttgcacaacaccgcacaacgc
cggcggtgttatcgtgatgaactttattcacatccatcgcagcaggtgctgattactagc
acaacgatggaaccaaaaatgaactcaggtaaatcctgtatgagctatctcgccagccac
attaaacatcctaaacaaaatacggataccgatgcagccctgcatcatgcacagaaggat
tttaccgttataacttcaggcgaagttgaggtagcaatagtcagcaatacgttaataaac
caacaactaccgcagtcaatgatagttccgctggtgccatcacataagcaagatactagc
actaatgcagtaaagccggtgaacacccccgataaacagcaattagcacaatgtaagatt
cagccatccacattccccgacagctgtgatatatcgtcaaccgctaaaaaaaatattgtg
ccggtagacccacgcgacgaagcctataacaatgcaatccacagtaacaaaacagaaccg
ctatcggttaacccgcgcaatgtaaaacgtgtcgcttattccatctcgtcaacagtcacg
gttgcacccaacgagaattacggtatctcgcaggtaataccatctttagtaactcaagac
accaccttttatacgtcaccgcctgttggcctaccgctgacgcaggaaaaatacccatcg
ctaacaatgaaacaaacaaccatatcacgctttaagcaccatgccagtgcacctatgact
aaagcatcagcgccaatttatactccttcgtcgctgcctaatagcgattggcagcgacca
aattactgtttcaacggtcgtggcgccgcaggcgggcacgctgcagataaacaggcagct
gctccggctatccgaccaaccgctctagatccactgtaa
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