Sodalis endosymbiont of Henestaris halophilus: HBA_0504
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Entry
HBA_0504 CDS
T05311
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
seny
Sodalis endosymbiont of Henestaris halophilus
Brite
KEGG Orthology (KO) [BR:
seny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seny03032
]
HBA_0504 (topA)
03400 DNA repair and recombination proteins [BR:
seny03400
]
HBA_0504 (topA)
Enzymes [BR:
seny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HBA_0504 (topA)
DNA replication proteins [BR:
seny03032
]
Prokaryotic type
DNA Topoisomerases
HBA_0504 (topA)
DNA repair and recombination proteins [BR:
seny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HBA_0504 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2812
DUF2399
DUF1722
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
SNC58754
UniProt:
A0A2C8CWU8
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All DBs
Position
I:847859..850465
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AA seq
868 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYLVKSSVGHIRDLPASGAVTPKSIHDGKKKKDKLDP
HHALVNRMGIDPYHGWKARYEILPGKEKVVIELKALAEKANHIYLATDLDREGEAIAWHV
REVIGGDYNRFSRVIFNEITLNAITQAFKHPGELNIDRVNAQQARRFMDRVVGYMVSPLL
WKKIARGLSAGRVQSVAVRLVVEREREIKSFVPKEYWELHANLQTAQSLTLAMQVTHQQE
KIFKPINQRQIQAAVDRLENSVFVVSSREDQLISSKLGAPFITSTLQQAASTRLGYGVKK
TMMLAQRLYEAGYITYMRTDSTNLSQDALKMARCYIWVSFGSPYLPKNPNRYESKNNSQE
AHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFIACQMTPAQYESTVITVTANEFQLR
ARCRTLRFDGWTKVMPDWHKLSESQSLTAVEIGETLILSKVLPRQLFTNPPARYSEASLV
RELEKRGIGRPSTYVSIISTIQDRGYVHMENRRFYANKMGEIVTDRLEKNFSELMDYNFT
AKMEDTLDQVAANQQEWKSVLNVFFDKFSKQLKNAEKDPEDGGMRPNYMVMISIDCPFCG
RKMGIRTASTGVFLGCSGYVLPSKERCKHTINLIPETESLNMIEGDYAETNALRARRRCE
KCGIAMDSYIIDCQRKLYVCGNNPLCDGYAIAQGEFRIKGYNKPVIECEKCRAEMHLKLG
RFGKYMACVNEDCKNTRKILSNGNVAPPKSDPVPLPELLCEKSDAYFVLREGAAGVFLAA
NTFPKSRETRAPLVAELVRFRDCLPEKLRYLADAPIEDDEGNSTLVRFSRTTKQQYICSK
KACKATGWTAFYVDGEWQVFKKSCDNYS
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctctcgttatcgttgaatcgccagctaaagccaaaacgattaataaatat
ttaggaaaagattatttagttaagtccagcgtcggtcatattcgcgatttgccagccagc
ggtgcagtaaccccaaagagcatccacgatggtaaaaagaaaaaggataaacttgatcct
catcacgcattggtaaaccgaatgggcatcgatccttaccatggatggaaagcgcgatat
gaaatcttgccaggtaaagaaaaagttgtaattgaactaaaagcgcttgcagaaaaagct
aatcatatatatctcgcaactgaccttgaccgtgaaggagaggcgattgcctggcatgtg
cgcgaagttattggtggtgattataatcgttttagccgggtaatattcaatgaaataacc
ctcaatgcgattactcaggcctttaaacatcctggagagcttaatattgaccgagtcaat
gcccaacaggcacggcggttcatggaccgtgttgtaggctacatggtttcacctctgctc
tggaaaaaaatcgcacgtggtctttcagctggacgcgttcagtcggtagcggtcaggcta
gtagtagaacgtgagcgggaaataaaatcgtttgtaccgaaagaatattgggaacttcac
gccaatttgcaaaccgcacaatcgttgaccctagcgatgcaggtcactcatcagcaggaa
aaaatctttaaaccgattaatcagcgacaaattcaggcagcagtagaccggctagaaaat
tctgtttttgtggtcagctcccgtgaagatcaacttattagcagcaaactgggggcgcca
tttatcacctccacgctacagcaagcggctagtactcgcctgggttatggtgtgaaaaaa
actatgatgttggcacagcgtctgtatgaagccggatatattacttatatgcgaactgac
tccactaatttgagtcaagatgcgctgaaaatggcgcgatgctatatctgggtgtctttc
ggcagcccctatctaccgaagaatcccaacaggtatgaaagcaaaaataactcccaggaa
gcacatgaggctattcgtccctctgatgttaatgttttagcagagcaattgaaagacatg
gaagcggatgcgcaaaaactatatcagctgatatggcgtcaatttattgcctgtcaaatg
actccagctcaatacgaatctacagttataactgtgaccgctaatgagtttcaacttcgc
gctcgatgccgcacgctacgttttgatggttggacgaaagttatgccggattggcataag
ttatccgaaagtcaatccctgacagctgtggaaataggtgaaacacttatacttagcaaa
gtgctgcccaggcagcttttcacaaatccgcctgccaggtatagtgaagcctccctggtg
agggagttagaaaaacgcggtatcggccggccatcgacttatgtttctattatttctacg
attcaagatcgcggctacgtccacatggaaaatcgccgtttttacgcgaataaaatgggg
gaaattgttactgatcgtttagaaaaaaattttagcgagctaatggattataatttcacc
gccaaaatggaagataccctcgatcaagtagctgctaatcagcaagagtggaagagcgta
ctaaatgtattttttgacaagttcagtaaacaactaaaaaacgccgagaaagatccggaa
gacggaggcatgcggcctaattatatggtcatgatcagtattgattgtccgttctgcggt
cgaaaaatggggatccgaaccgctagcactggcgtgttcctgggatgttccggttatgtg
ttaccttcgaaagaacgctgtaaacataccataaatttaatacctgaaacggaaagtttg
aacatgattgagggagattatgctgaaactaatgctctgcgtgcacgccgccgctgtgaa
aaatgtggtatagccatggacagctatatcattgattgtcaacgtaagctttacgtatgc
ggtaataatcccctgtgcgatggttacgccatcgcacaaggagaattccggattaaaggc
tataacaaaccagtgatcgagtgtgaaaaatgcagagctgagatgcatctaaaattggga
cgttttggtaaatatatggcctgtgttaatgaggactgcaagaatacccgaaagatctta
agtaacggcaatgtagccccgccgaaatcggatccagtgccccttcccgagctgctttgc
gaaaaatcggatgcctattttgtattgcgtgaaggcgccgccggcgtttttttggctgct
aatactttccccaagtcccgtgagacgcgtgctccgctagtagcggagctagttcgtttt
cgcgattgtctgccggaaaagcttcgatatctggcagatgcgcccatagaagatgatgag
ggaaatagcactttagtgcgttttagtcgtacaactaagcagcaatatatttgctcgaaa
aaggcctgtaaggccaccggatggaccgctttttatgttgatggagaatggcaagtgttt
aaaaaatcatgcgataactattcctaa
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