Sodalis endosymbiont of Henestaris halophilus: HBA_0508
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Entry
HBA_0508 CDS
T05311
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
seny
Sodalis endosymbiont of Henestaris halophilus
Brite
KEGG Orthology (KO) [BR:
seny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seny03016
]
HBA_0508 (rnb)
Enzymes [BR:
seny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HBA_0508 (rnb)
Transfer RNA biogenesis [BR:
seny03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HBA_0508 (rnb)
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
SNC58758
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Position
I:complement(860086..862023)
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AA seq
645 aa
AA seq
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MFQDNPLLAQLKQQLHSQSSRVEGVVKSTEKKFGFLEVNAQKSYFIPPPFIKMVMHGDKI
TAVIRKEKDREIAEPEKLIKPFLTRFVGKVQVKANSITVVPDHPFIKEVIAILPPRIDSY
TFQTGDWAVAEMRGHPLNGDRYFYAEIIALVTTADDHFAPWLITLARHNLERTAPTMPKG
IVLQEKDGPARKDLTALDFITIDSASTEDMDDAIHLVSKTDGSWIMTIAIADPTAWVLAG
SQLDRIARKRAFTNYLPGFNIPMLPRMLSDDLCALRAHERRPALVCRITVRKNGTLANDV
HLFTAWVESKAKLVYGNVSDWLENIGRWRPENDAIENQIRLLHDVCKARNAWRQHHALVF
RDRPDYRFVLDDKGNVNDIIVEPRRIANRMIEEAMITANICAARLLRDHLGYGLYNVHHG
FDPLLVDQAVTVLCNHDINVNSTELLTLEGFCALRRRLAALPNTYLDSLLRRFQTFAKIS
IAPGPHFGLGLDAYATWTSPIRKYSDMLNHRLLKSLIGIGQAERPSEDITLLLAERRRKN
RMAERDVTDWLYARFLQSQAGSRRCFTAEIFDISRGGMRVRLLDNGAVAFIPSTFVHSVR
DELVCNQDTGTVQVKGEEIYRQGDILEVTIAEVKVENRTVIARPI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcgcagctaaaacagcaattgcattctcagtcctcg
cgtgttgaaggcgtagtaaaaagcacagagaaaaagtttggcttccttgaagtgaacgcc
caaaaaagttatttcattccaccaccttttataaaaatggttatgcatggcgataaaatc
actgctgtaatacgtaaggaaaaagatcgtgagattgcggaaccagaaaaactgatcaaa
ccgtttttaacgcgttttgtagggaaggttcaggttaaagccaatagtattaccgtcgtg
ccagaccatccttttattaaagaagttatcgcaatactgccacctcgcatcgatagttat
acctttcaaaccggcgactgggcagttgcagaaatgcgcggccatccgttgaatggtgat
cgttatttttatgcagaaataatcgcgctcgtcactaccgccgatgaccactttgcacct
tggttgattactcttgcccgccataatcttgagaggacggcgccaacaatgccgaaagga
atcgtactgcaggaaaaagacggaccagcgcgcaaagatctaaccgcgctagattttata
actatcgatagcgctagcactgaagatatggatgatgcaattcatctggttagcaaaaca
gacggttcctggattatgaccattgcgatagctgatccgaccgcatgggtgttggccggc
agccagttagatcgtattgcccgtaagcgcgcctttactaattacttaccaggttttaat
attcccatgctaccacgtatgctgtccgatgatctatgcgcgctacgtgctcacgaacga
cgcccagcattagtctgccgcattacggtaaggaagaatggtactctggccaacgacgta
catttatttaccgcctgggtagaatccaaggcaaaactagtctatgggaatgtttccgac
tggttagaaaatatcggtagatggcgaccagaaaacgatgcgatagaaaatcagattcgc
ttgctgcacgatgtttgtaaggcacgaaatgcttggcgtcaacatcacgctctagtattc
agggatcgccctgattatcgctttgtactagatgataaaggcaacgtaaatgatattatc
gtcgaaccgcgccgtatcgccaatcgtatgatagaggaagcgatgataactgctaacatc
tgtgcagcgcgcttattacgcgatcacttaggatatggcctgtacaatgtgcatcatggc
tttgatccactactggtagatcaagcagtgaccgtcttatgtaaccacgacattaatgta
aattcgaccgaacttttgacattagaagggttttgcgctttacgccggcggctagctgct
ctgcccaacacctatttggacagtctcctccgccgttttcaaacattcgctaaaattagc
atagcacctggcccacactttggtctggggctggatgcttatgcgacctggacctcgccg
atccgtaaatacagcgatatgctcaatcaccggctgctcaagtcattgattggcattggt
caagcagagcgtcctagtgaagatataacgctcctccttgccgaacgacgcaggaaaaat
cgcatggctgaacgagatgtgacagattggctatacgctcgttttctacagtcacaagct
ggcagccgccgctgttttacagcggaaatctttgatatttcaaggggcggtatgcgagta
cgcttactggataatggtgcggtggcattcatcccgtctacttttgttcacagcgtgcgt
gacgagctagtctgtaatcaggatactggcaccgtgcaagtaaagggtgaggaaatctac
cgccaaggagatatccttgaagtcacgatagccgaagtaaaggtggaaaaccgcacagtg
attgcccgcccaatttaa
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