Seohaeicola sp. tig00000074: ACMUJL_19130
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Entry
ACMUJL_19130 CDS
T11112
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
seoh Seohaeicola sp. tig00000074
Pathway
seoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMUJL_19130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seoh03019
]
ACMUJL_19130
Messenger RNA biogenesis [BR:
seoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACMUJL_19130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XOY40009
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Position
3873120..3874793
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AA seq
557 aa
AA seq
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MSSKRLIYLPLGGAGEIGMNCYVYGYGAPDDERLIVVDVGVAFPDMDGTPGVDLILPDIA
WLEERKTRIEAVFITHAHEDHVGAIGHLFERLGEPKVYARAFTSNIARGKLAEYGYSDKV
VKTVSKWPETVTAGPFTVGFLPMSHSIPETSALVIDTPEGRVIHTGDFKLDRTPLVGEPF
DPDLWAEVSAGGVKALICDSTNVFNQHEGRSEATLGPAITDLIAAQKGMVVATTFASNVA
RVKTLAEAGVAAGRSICLMGRAMRRMIEASVETGVLSSFPKVVSPEDAMAMPRDNVMLIV
TGSQGERRAASAQLANGKYQGVVLKEGDMFLFSSKTIPGNEKGVIRIINQFSEMGVDVVD
DSNGKYHVSGHANRPDIEFIQKLVKPQIVVPMHGEHRHLREMVKIAKGNRFQSILASNGM
IVNLGGNEPAVAGYVETGRTYLDGSAQVGALDGVVRDRIRMALNGHVTVTLILDDENEPL
GEPWCEIMGLAQTGRSRAPLVEVLEADLDQFINRASEATLADDDKLEQQLKKIVRQTALD
EIGKKPEVTVVISRLSA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaagcgattgatctatctccccctcggcggcgccggggaaatcgggatgaac
tgctatgtctacggatacggggcgcccgatgacgaacggctgatcgtcgtcgacgtcggg
gtggcctttcccgatatggacggcacgccgggtgtggacctgatcctgcccgatatcgca
tggctggaagagcgcaagacccggatcgaggcggtgttcatcacccatgcccacgaggat
cacgtcggcgccatcggccacctgttcgagcggctgggcgagccgaaggtctatgcccgc
gccttcacctcgaatatcgcgcggggcaagctggccgaatacggctattccgacaaggtg
gtcaaaacagtgtcgaaatggcccgaaaccgtgacggcaggaccgttcaccgtgggtttc
ctgccgatgtcccactcgatccccgaaacctcggcgctggtgatcgacacgcccgaaggc
cgcgtgatccataccggcgatttcaagctggaccgcacaccgcttgtgggcgagcccttt
gaccccgacctctgggccgaggtgtcggccggtggggtcaaggcgttgatctgcgacagc
accaacgtgttcaaccagcatgaaggccggtccgaggccacgctgggccctgcgatcacc
gatctgatcgcggcgcagaagggcatggtggtggccacgacctttgccagcaacgtggcg
cgggtcaagacactggccgaggcgggcgtggcggcgggccgatccatctgcctgatgggg
cgcgccatgcgccggatgatcgaagcctcggtggaaaccggggttctgtcctccttcccc
aaggtggtcagccccgaggacgccatggcgatgccgcgcgacaatgtcatgctgatcgtc
accggcagccagggcgaacgccgcgccgccagcgcgcagctggccaatggcaagtaccag
ggtgtcgtgctgaaggaaggggacatgttcctgttctcgtccaagacgattccgggcaat
gaaaagggcgtcatccgcatcatcaaccagttcagcgaaatgggcgtggacgtggtggat
gacagcaacggcaagtatcacgtctcgggccatgccaaccggccggacatcgaattcatc
cagaaactggtcaagccgcagatcgtggtcccgatgcatggcgaacaccgccacctgcgc
gagatggtcaagatcgcaaagggcaaccgctttcagtcgatcctggcctcgaacgggatg
atcgtgaaccttggcggcaatgaacccgccgtggccggatatgtggaaacgggccgcacc
tatctggacggttccgcgcaggtgggcgcgctggatggtgtggtgcgcgaccgtatccgc
atggcgctgaacgggcatgtcaccgtgaccctgatccttgatgacgagaacgagcccctg
ggcgagccttggtgcgagatcatgggtctggcccagaccgggcggtcgcgcgcgcccctg
gtcgaggtgctggaggcggatctggaccagttcattaaccgcgcctccgaggcgacgctg
gccgatgacgacaagctggaacagcagctgaagaagatcgtccgccagacagcactggac
gagatcggcaagaagcccgaggtgacggtggtcatcagccgcctgagcgcctga
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