Seonamhaeicola sp. S2-3: BWZ22_06785
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Entry
BWZ22_06785 CDS
T04683
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
seon
Seonamhaeicola sp. S2-3
Pathway
seon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWZ22_06785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seon03019
]
BWZ22_06785
03016 Transfer RNA biogenesis [BR:
seon03016
]
BWZ22_06785
Enzymes [BR:
seon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BWZ22_06785
Messenger RNA biogenesis [BR:
seon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BWZ22_06785
Transfer RNA biogenesis [BR:
seon03016
]
Prokaryotic type
tRNA degradation factors
BWZ22_06785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
WHD_E2F_TDP
CSD
Motif
Other DBs
NCBI-ProteinID:
APY10964
LinkDB
All DBs
Position
1459665..1461863
Genome browser
AA seq
732 aa
AA seq
DB search
MTKKRKGKSRKKGISNLTNTILSILKKDRNKTYNYKQIAAKLGVNDASSRNQIIKTLAKL
AAKQEIEQVDRGKFKAVVTAEYHTGILDLSAKGSGYIISDAFDDDVYIASNNINKALNGD
EVEFYVYKRRKRGKLEGEITQIIKRAKSEYVGVIQLHDKYAFVIPDSNKMYKDIFIPINK
TFKAEDGDKVLVKLEDWPEKADSPYGKVIKVLGKPGDHNTEIHAILSEYGLPFEFPYEVE
DFANKIDTSITKDEIAKRRDMRQDLTFTIDPKDAKDFDDALSFKVLENGLYEIGIHIADV
SHYVKEGTVLDDEAYNRATSVYLVDRVVPMLPEVLSNNACSLRPHEEKYTFSAVFKINDK
AEVKHQWFGRTVTYSDARFAYEEAQAIIESKTNEIPSDVSLTGKAYKTNENLSNAILKLN
ELAKIMRNKRMKNGAISFDKVEVKFNLDEDNNPEGVYFKTSKDANKLIEEFMLLANKKVA
EFIGKQNPKKTFIYRVHDEPDDSKLAALQNIVGRFGYKLNFKDRKSTTASLNNLLTEVVG
KKEQNLVDTLTIRSMSKAEYTTHNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDG
GKSVSEEVYEEKCQHSSNMEYLATKAERDSIKYMQIRFMEDHKNQEFVGVISGVTDWGIY
VEIISNKCEGMVSLRDITDDHYVFDESQFAIVGRNTKNTYQLGDEVVVKVKNTDLVKKHL
DFNLIGKPEDVL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaaagaaaagggaaatccagaaaaaagggaatttccaaccttacaaatact
attcttagtatattaaaaaaagacagaaacaaaacttataactataaacaaattgcagct
aaacttggtgttaatgatgctagtagccgtaatcaaattataaaaacactagccaaactt
gcagctaaacaagaaatagaacaagtagatagaggtaaatttaaagctgtagtaactgca
gaataccatactggtattttagatttatctgcaaaaggatctgggtatattattagtgat
gcgtttgatgatgatgtatatatagcctctaataatattaacaaagccttaaatggtgat
gaagtagaattctatgtgtataaacgtagaaaacgcggtaagttagaaggtgaaataaca
caaattattaaacgcgctaaaagtgaatacgtaggcgttattcaattacatgataaatat
gcatttgttattccagatagcaataaaatgtataaagatatttttatacccattaacaaa
acatttaaagctgaagatggtgataaagttttagttaaactagaagattggcccgaaaaa
gccgattctccatatggtaaagttattaaagttttaggtaaacctggtgatcataataca
gaaattcatgctattctttcagaatacggattaccttttgaatttccttatgaagtagaa
gattttgctaataaaatagatacctctattaccaaagatgaaattgccaaacgtagagat
atgcgtcaagatcttacatttactatagatccaaaagatgctaaagattttgatgatgct
ttatcatttaaagttttagaaaacggattgtatgaaataggtattcacattgccgatgta
tcacattatgtaaaagaaggtaccgttttagatgacgaagcttacaatagggcaacatct
gtgtatttagtagatagagtagtacctatgttaccagaagtgttatctaataatgcctgt
tcattgcgtcctcatgaagaaaaatataccttttcagcagtatttaaaataaatgataaa
gccgaagtaaaacaccaatggtttggaagaacagtaacttatagcgatgcacgttttgct
tatgaagaagcgcaagccataattgagtctaaaaccaatgaaattccttcagatgtttca
ttaacaggaaaagcttataaaaccaatgaaaatctatcaaatgctattttaaaattaaat
gaattagcaaaaataatgcgtaataaacgcatgaagaatggagctatttcttttgataaa
gtagaagtaaaattcaatttagatgaagataataatccagaaggcgtgtattttaaaacc
agtaaagatgctaataaactaattgaagaattcatgctgttggctaataaaaaagtagcc
gaatttataggaaaacaaaatcctaagaaaaccttcatatatcgtgttcatgatgagcca
gatgatagtaaattagcagctttacaaaatatagttggcagatttggttataaactaaat
tttaaagacagaaaatcaaccaccgcttcattaaataatcttcttaccgaagtagttggt
aaaaaagaacaaaatttagtagatacgctaaccatacgtagtatgagtaaagccgaatat
actacccataatatagggcattacggtttagcatttgattattactcacattttacttct
cctattcgtcgttaccccgatgttatggctcatagattattacaacattatttagatggc
ggaaaatctgtaagtgaagaggtttacgaagaaaaatgtcaacattccagtaacatggaa
tatttagcaactaaagccgaaagagattctataaaatatatgcaaattcgttttatggaa
gaccataaaaatcaagaatttgtaggtgttatttctggagtaacagactggggaatttat
gttgaaataatttcaaataaatgcgaaggaatggttagtttaagagatattacagatgat
cattatgtatttgatgaaagtcagtttgctatagtaggaagaaatactaaaaacacttat
caattaggagatgaagttgttgtaaaagttaagaatacagatttagttaaaaaacattta
gattttaatttaataggaaaaccagaagatgtattgtaa
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