Staphylococcus epidermidis ATCC 12228: SE_0541
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Entry
SE_0541 CDS
T00110
Name
(GenBank) exinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sep
Staphylococcus epidermidis ATCC 12228
Pathway
sep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SE_0541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sep03400
]
SE_0541
DNA repair and recombination proteins [BR:
sep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SE_0541
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SE_0541
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA
AAA_25
AAA_7
AAA_22
DUF87
UB2H
TrwB_AAD_bind
HerA_C
UFL1
Motif
Other DBs
NCBI-ProteinID:
AAO04138
UniProt:
Q8CPZ0
LinkDB
All DBs
Position
534698..536683
Genome browser
AA seq
661 aa
AA seq
DB search
MVEHVPFKLKSEFEPQGDQPQAIQKIVDGVNERKRHQTLLGATGTGKTFTMSNVIKEVGK
PTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDE
IDQLRHSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVD
VQYSRNDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIRER
EHFTIFPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMR
EMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARK
QVLIDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDEMVEQIIRPTGLL
DPKIDVRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTI
GRAARNDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISA
TVESDETNQQQQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggtagaacatgttccatttaagttaaagtctgaatttgagccacaaggtgatcagcca
caagcgatacaaaaaattgtggatggcgtaaatgaaaggaaacgtcatcaaaccttatta
ggtgcaactgggacaggtaaaacttttactatgagtaacgtaattaaagaggttggtaaa
cctacacttattattgcacataacaagacattagcaggtcaactatatagtgaatttaaa
gaatttttcccagaaaatagagttgaatatttcgttagttattacgactactatcaacct
gaagcatacgtgccttcaacagatacttttattgaaaaagacgcctccattaacgatgaa
attgaccaactacgacattctgctacaagttctttatttgaacgtgatgatgtcattatt
atcgcaagtgttagttgtatctatggtttaggtaatccggaagaatataaaaatttggtt
gttagtgtacgtgttggtatggagatggaacgaagcgaattgttgagaaagttagttgat
gtacaatactcacgtaatgacatagattttcaacgtggtacatttagagtgcgtggagat
gttgttgaaatattcccagcttctagagaagaaatgtgtattcgcgtagaattttttgga
gatgaaattgatcgcatcagagaagttaactatttaactggtgaagtaattcgagaacgt
gaacattttacaattttccctgcttcacacttcgttactcgtgaagagaaaatgaaagta
gctattgaacgtatagaaaaagaattagaagagagactaaaagaattacgtgatgagaat
aaattattagaagctcaaaggttagaacaacgtactaactacgatttagaaatgatgaga
gaaatgggcttttgttcaggtattgaaaattattctgttcacttaactttaagaccatta
ggttcaacaccatatacattgcttgattattttggagatgattggcttgtcatgattgat
gagtctcacgttacgttacctcaaattcgtggtatgtacaatggggatagagctcgtaaa
caagtattaatagaccatggatttcgtttgccaagtgcgttggataaccgaccattaaaa
tttgaagaatttgaagaaaaaacaaaacaacttgtttatgtttcagctacaccaggccca
tatgagttagaacatacagatgaaatggttgaacaaattatacgacctactggtttactt
gatcctaaaattgatgtgcgtccaactgagaatcaaatcgatgatcttttaagtgaaatc
caagatcgcgttgacaaagatgaacgtgtacttgtgacaacacttactaaaaaaatgagt
gaagatttaactacatatatgaaagaagcggggattaaagttaattatttacactcagaa
attaaaacattagaacgaatagaaattattcgagacttacgtatgggtacttacgacgca
atagttgggatcaatctgctgagagagggtatagatatacctgaagtatctttagttgta
attttagatgcagataaggaaggcttcttacgttctgatagatctcttattcaaactatt
gggcgagcagcacgtaatgacaaaggagaagtcattatgtatgcggataaaattacagat
tctatgcaatatgcaatagatgaaacacaaagacgtagagaaatacaaattgctcataac
aaagaacatggcatcacgccgaaaacaattaacaaaaagattcacgacgtcattagtgct
actgtggagagcgatgagacaaatcaacaacaacaaactgaattacctaagaaaatgaca
aagaaagaacgtcaaaaaacaatagaaaatatagaaaaagaaatgaaaaaagcagccaaa
gatttagatttcgaaaaagcaacagagttaagagatatgttatttgaattaaaagcagaa
gggtga
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