Staphylococcus epidermidis ATCC 12228: SE_0565
Help
Entry
SE_0565 CDS
T00110
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sep
Staphylococcus epidermidis ATCC 12228
Pathway
sep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SE_0565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sep03019
]
SE_0565
03016 Transfer RNA biogenesis [BR:
sep03016
]
SE_0565
Enzymes [BR:
sep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SE_0565
Messenger RNA biogenesis [BR:
sep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SE_0565
Transfer RNA biogenesis [BR:
sep03016
]
Prokaryotic type
tRNA degradation factors
SE_0565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
Rho_RNA_bind
RNase_II_C_S1
OB_Dis3
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AAO04162
UniProt:
A0A0H2VGX0
LinkDB
All DBs
Position
561606..563984
Genome browser
AA seq
792 aa
AA seq
DB search
MNLKQSIEEMIKQPDYEPMSVSDFQDALGLNSADSFRDLIKILVELEQSGLIERTRTDRY
QRKQSNKTNSKLIKGTLSQNKKGFAFLRPEDDEMDDIFIPPTKINRALDGDTVIVEIQKS
RGEHKGKIEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDDKRIMQDIFIPKGQNLGAVDG
HKVLVQITKYADSTDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDDVLQEAEEVP
DVIEPSEIEGRRDLRDELTITIDGADAKDLDDAIAVKKLKNGNTELTVSIADVSYYVKEG
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEEDRLTLSCRMEINERGEVVKHE
IFDSVIHSNYRMTYDAVNKIITDQDSEIRSQYKDLTPMLDLAQDLSNRLIRMRKRRGEID
FDINEAKVLVNDEGIPTEVLMRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQNIQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIENSMDKKEIRHWEETLPELA
EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI
ANMTDDYYHFDERQMALIGERQAKVFRIGDAVKVKVTHVDVEERMIDFQIVGMPLPKKTS
SQRPAREKTIQAKTRGKSLDHTKSDRNGKGKKKKRKQRKGKNARKKDKQGNTHHKPFYKD
KSVKKKSRRKKK
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatccatcgaagaaatgataaaacaacctgactatgaacccatgtca
gtatctgactttcaagatgcgttaggtttaaacagtgccgactcatttagagatttaatt
aaaatactcgttgaattagaacagtctggtttaattgaacgtacaagaacagacagatat
caacgtaaacaatccaacaaaacaaattcaaaactaatcaaaggaacgttaagtcaaaat
aaaaaaggctttgctttcttaagacctgaagatgacgagatggatgatatttttattcca
ccaactaaaatcaatagagcattagatggagatactgtcatcgtggaaattcaaaaatct
cgtggagaacataaaggtaaaattgaaggtgaagtaaaatctattgaaaagcattcagtt
acacaagttgttggaacgtatagcgaagcaaagcattttggtttcgtattaccggatgac
aaacgtattatgcaagatatctttatacctaaaggacaaaatttaggtgctgtagatggt
cataaagtattagtacaaattacgaagtatgccgatagtactgacaatccagaaggccac
gtttcagcaatattaggtcataaaaatgatccaggtgtagatatactttccatcatttac
cagcatggaatagaaatcgagtttccagatgatgtattacaagaagctgaagaagtaccg
gatgtaatagaaccatctgaaatcgaagggcgtcgtgatttaagagatgaattaacaatc
actatagatggcgcagatgctaaagatttagatgatgccattgctgtaaaaaaattaaaa
aatggcaacaccgagcttacagttagtattgcagatgtaagttactatgtaaaagaagga
tcagctttagataaagaagcatatgatcgtgcgacaagtgtgtatcttgtcgatcgagta
atcccgatgattccacaccgtctaagtaatggaatatgctcattaaatccggaagaagat
cgtttaacattaagttgtcgaatggaaataaatgaacgaggcgaagttgtaaaacatgaa
atctttgatagtgtaatacattcaaactacagaatgacatatgatgcagttaacaaaatt
atcactgatcaagattctgaaatacgttcacaatataaagatttaacacctatgttagat
ttagcgcaagatttatcaaatagattaattcgtatgcgcaaacgtcgtggagaaattgat
tttgatattaatgaagcgaaagtacttgtgaatgacgaaggtattccaacagaagtgcta
atgagagaacgtggcgaaggagaacgtttaattgaatcattcatgttagcagccaatgaa
acagtagctgaacacttcaataaattggaagtaccatttatttatcgtgttcatgaacaa
ccaaaatctgaccgattaagacagttcttcgactttattaccaattttggtattatgatt
aaaggtacaggtgaagatattcatccaacaacattacaaaacattcaagaagaagttgaa
ggtagaccagaacaaatggttatttcaacgatgatgttacgttctatgcaacaagcacat
tatgatgatgttaatttaggacattttggtttgtctgctgagtactatactcactttacg
tctccaatacgccgttatcctgatttaacagtgcatagattaattcgtaaatatttaata
gagaattctatggataaaaaagaaatacgtcattgggaagagacgttgccagaattagct
gagcacacatcacaacgtgaacgccgtgccattgaagccgaacgtgatactgatgaattg
aaaaaagctgagtatatgattcaacatattggtgatgaatttgaaggtatcattagctcg
gttgctaattttggtatgtttatagaattacctaatactattgagggtatggttcatatc
gctaatatgacagacgattattatcattttgatgaacgacaaatggcactaatcggtgaa
cgtcaagcaaaggtctttcgcattggtgatgcggtcaaagttaaagtgacacatgttgat
gtggaagaacgcatgatagatttccaaattgttggcatgccattacctaaaaagacatca
tcacaacgacctgctcgtgagaaaaccattcaagctaaaacacgtggcaagtcgttagac
catactaaaagtgatcgtaatggtaaaggtaaaaagaaaaaacgtaagcaacgtaaaggt
aaaaatgctcgtaaaaaagataaacaaggtaatacgcaccacaaacctttttataaagat
aaaagtgtgaagaaaaaatcacgtcgaaagaaaaaatag
DBGET
integrated database retrieval system
