Staphylococcus epidermidis ATCC 12228: SE_0926
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Entry
SE_0926 CDS
T00110
Name
(GenBank) DNA topoisomerase I topA-like protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sep
Staphylococcus epidermidis ATCC 12228
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sep03032
]
SE_0926
03400 DNA repair and recombination proteins [BR:
sep03400
]
SE_0926
Enzymes [BR:
sep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SE_0926
DNA replication proteins [BR:
sep03032
]
Prokaryotic type
DNA Topoisomerases
SE_0926
DNA repair and recombination proteins [BR:
sep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SE_0926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Toprim_2
Cys_rich_CPXG
Motif
Other DBs
NCBI-ProteinID:
AAO04523
UniProt:
Q8CSU3
LinkDB
All DBs
Position
926199..928268
Genome browser
AA seq
689 aa
AA seq
DB search
MADNLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGK
GPVVKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDSKENRVVFNEITKDAVKD
SFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDREN
EIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLNNKDDVQRITEALNGDQFEITN
VNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQGTVGLITYMR
TDSTRISTSAKSEAQQYINDKYGEQYVSQRKSSGKQGDQDAHEAIRPTSTMRTPDDMKAF
LTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNDIKFRANGQTIKFKGFMTLYVEAK
DDKENDKENKLPQLDKGDKVTATKIEPAQHFTQPPPRYTEARLVKTLEELKIGRPSTYAP
TIDTIQKRNYVKLESKRFIPTELGEIVYEQVKEYFPEIIDVEFTVNMETLLDKIAEGDMN
WRKVIGDFYNSFKQDVERAESEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNF
PDCRNTKAIVKTIGVTCPKCNEGDVVERKSKKNRIFYGCSRYPECDFISWDKPVGRDCPK
CHHYLVNKKKGKSSQVVCSNCDYEEEVQK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
ttggcagataatttagtcattgttgaatcgcctgcaaaagctaaaaccattgaaaaatat
ttaggcaaaagatataaagttattgcttcaatgggacatgttcgtgacttaccaagaagt
caaatgggtgtcgacactgaagataactatgaaccaaaatatattacaattcgtggcaaa
ggtcctgtagttaaagatttaaaaaaacatgcgaaaaaagcaaaaaaaatatttttagct
agtgaccctgaccgtgaaggtgaagcgattgcttggcatttatcaaaaattttagaatta
gaagatagcaaagaaaatagagtagtatttaatgaaattacaaaagatgctgttaaagat
agttttaagcatcctcgtggtattgaaatggatttagttgacgcgcaacaagcacgtcgt
attttagatagactcgttggttataatatttctccagtattatggaagaaagttaaaaaa
gggctgtctgctgggagagttcagtcagttgctttacgtttagtcattgatcgtgaaaat
gaaattcgtaattttaaacctgaagagtattggtccattgaaggtgaatttagatacaag
aaatctaaatttacagctaaatttctacactataaaaataaaccttataagctaaacaac
aaagacgatgttcaaaggattactgaagcattaaatggtgatcaatttgaaatcacaaat
gtgaatcgtaaagaaaaaacacgttatcctgctcatccatttactacatcaaccttacaa
caagaagctgcacgtaaactaaattttaaagcacgcaagacaatgatgttagcacaacaa
ttatacgaaggtattgacttaaagcgtcaaggtacagtaggtttaattacgtatatgcgt
accgattctactcgtatatcaacttctgcaaaatcagaagcgcagcaatatataaatgat
aaatatggtgaacagtacgtgtctcagcgtaaatcatcgggtaaacagggcgatcaagat
gctcacgaagctattagacctactagtacaatgcgaactcctgatgacatgaaagctttt
cttactagagatcaacaccgtctatacaaattaatttgggaaagatttgtagcaagtcag
atggctccagctattttggatacagtagctttagatgtaactcaaaacgacattaaattt
agagctaatggtcaaactattaaatttaaaggttttatgacactatatgtagaagcaaaa
gatgataaagagaatgataaagaaaataagcttcctcaactagataaaggagataaggta
actgcgacaaagattgaaccggcacaacactttacacaacctcctcctcgttatactgag
gcgcgtttagttaaaacgcttgaggaacttaaaattggaagaccttcaacatatgctcca
accattgatacgattcaaaagcggaactacgtcaagttagaaagtaaacgcttcatccca
actgaattaggagaaattgtttatgagcaagttaaagaatacttcccagaaattattgat
gtagaattcactgtaaacatggaaacattacttgataaaattgccgaaggtgacatgaat
tggcgtaaagtaataggagacttctacaacagttttaaacaagatgttgaacgcgcagaa
tctgaaatggaaaagattgagattaaagacgagccagctggtgaagattgtgaagtctgt
ggttctccaatggttattaaaatgggaagatatggtaagtttatggcatgttcgaacttt
ccggactgtcgtaacaccaaagcaattgtcaaaacgattggtgtcacatgtccgaagtgt
aatgaaggagatgtcgtagaacgtaaatcaaagaaaaatagaattttctatggttgttct
agatatccagaatgtgattttatttcttgggataaacctgttggaagagattgtcctaag
tgtcatcattaccttgtgaacaagaaaaaaggtaaaagtagtcaagttgtgtgctccaac
tgtgattatgaagaagaagttcaaaaatag
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