Staphylococcus epidermidis ATCC 12228: SE_0951
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Entry
SE_0951 CDS
T00110
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sep
Staphylococcus epidermidis ATCC 12228
Pathway
sep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SE_0951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sep03019
]
SE_0951
03016 Transfer RNA biogenesis [BR:
sep03016
]
SE_0951
Enzymes [BR:
sep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SE_0951
Messenger RNA biogenesis [BR:
sep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SE_0951
Transfer RNA biogenesis [BR:
sep03016
]
Prokaryotic type
tRNA degradation factors
SE_0951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
SPATA25
Motif
Other DBs
NCBI-ProteinID:
AAO04548
UniProt:
Q8CST1
Structure
PDB
PDBj
LinkDB
All DBs
Position
954612..956717
Genome browser
AA seq
701 aa
AA seq
DB search
MSQEKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLT
VNYEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSA
DPDCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVA
GHKDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPIKQEFVPVERDE
DLVEKVKSLTEDKGLKDTVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAI
LNDLIKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTL
GALGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIP
DTQDFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYT
ILTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDH
MLHTIEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF
IGAVDQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQ
ERINKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQSKN
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagagaagaaagtttttaaaactgaatgggctgggcgttctttaactattgag
acaggacaattagcaaagcaagctaatggtgctgttttagtgcgttatggagatacagtt
gtcctatcaactgcaactgcttctaaagaacctagagatggcgattttttcccattaact
gtaaattacgaagaaaaaatgtatgctgctggtaaaataccaggaggattcaaaaaaaga
gaaggtcgccctggtgatgaagcaacgttaacagctcgtctcattgatagacctattcgt
ccactgtttccaaaaggatatagacatgacgtacaaatcatgaatattgtcttaagtgct
gatccagattgctcaccagaaatggcagcaatgattggttcttcgatggcgttaagtgtt
tcagatattccattccaaggtcccatcgcaggtgtaaatgtaggttatatcgatggcaaa
tatgtcattaatccttccgtcgctgataaagaaatttctagattagatttagaagttgct
ggtcataaagatgcggtaaacatggttgaagcaggcgcaagtgaaattactgagagtgag
atgcttgaggctattttcttcggacacgaggaaatcaaacgacttgttgcattccaacaa
gaaatcatcgatcacattcaaccgataaaacaagaatttgtaccggtggaaagagacgaa
gatttagttgaaaaagtaaaaagtttaactgaagataaaggacttaaggacacggtttta
actttcgataagcaacaacgagatgaaaacttagatgctctgaaagaagaagttgttggt
cattttctagatgaagaagatcctgaaaatgaaacgcttgttaaagaagtttatgcaatt
ctaaatgacttaattaaagaagaagtaagacgtctaattgcagatgaaaaaatacgacct
gatggacgtaaagtagatgaaataagacctcttgaatcagaagttggtttgttaccaaga
gctcatgggtcaggtttatttactcgtggtcagacacaagcactttcagttttaacttta
ggcgcacttggagattatcaattaattgatggtttaggacctgaggtagaaaaacgtttt
atgcatcattataactttcctaatttctctgtaggagaaactggccctgtacgtgcacct
ggtagacgtgagattgggcatggtgcgcttggtgaaagagcattacgttacattatacct
gatactcaagatttcccttatacaattcgtattgtaagtgaagtattagagtctaacggt
tcatcatctcaagcatcgatttgtggttcaacattagcattaatggatgccggtgtacca
attaaagcgccagtcgcagggattgcaatgggactagtaacgcgtgacgatagctataca
attttaactgatattcaaggaatggaagatgcattaggtgatatggacttcaaagtagca
ggtactaaagacggtattactgcgattcaaatggatattaaaattgatggtttaactcga
gaagttattgaagaagcactagaacaagcgcgtcaaggacgattagctattatggatcat
atgcttcacacgattgaacaaccacgcgaagaattaagtgcttacgcaccaaaagtggta
actatgagtattaatccagataaaattcgagacgtgattggaccaggtggtaagaaaatc
aatgaaattatcgacgaaactggagttaaattagatattgaacaagatggtacaatcttt
ataggtgctgtagatcaagcgatgattaaccgtgcaaaagaaattatcgaagatattaca
cgcgaagcggaagttggacaagtatatcatgctaaagtaaaacgtattgaaaagtatggt
gctttcgttgaattgttccctggtaaagacgcgttattacacatttctcaaatttcacaa
gaaagaattaataaagtagaagatgttcttaaaattggagatacaattgaagtgaaaatt
actgaaatcgataaacaaggtcgcgttaatgcgtcacataaagtattagagcaatctaaa
aattaa
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