Staphylococcus epidermidis ATCC 12228: SE_1245
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Entry
SE_1245 CDS
T00110
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
sep
Staphylococcus epidermidis ATCC 12228
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sep03019
]
SE_1245
03009 Ribosome biogenesis [BR:
sep03009
]
SE_1245
Enzymes [BR:
sep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SE_1245
Messenger RNA biogenesis [BR:
sep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SE_1245
Ribosome biogenesis [BR:
sep03009
]
Prokaryotic type
rRNA helicases
SE_1245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAO04844
UniProt:
A0A0H2VGE6
LinkDB
All DBs
Position
complement(1274433..1275779)
Genome browser
AA seq
448 aa
AA seq
DB search
MSKHPFEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLL
PLIQLIESDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQRC
SHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENA
HLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELID
ILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA
SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLIE
DRGYKFENVDIKNGELKPIKAYNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKFK
QEVEKMKRQERKQYSKKQNRQKRKNNKG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacatccatttgaacactttaatttagatgagaatttaattgaagctgttaaa
aatctcaattttgaaaaaccgactgaaatccaaaatagaatcataccgagaattcttaaa
ggaacaaatttaataggacaatctcaaactggaactggaaagtcacacgcttttctttta
ccattaattcaacttatagaaagtgacattcaagagccacaagccatcgtagtagctcca
acacgtgaacttgctcagcaactatatcaagttgctatgcatttagtaaaattcaaaaaa
ggtataaatgtaaaacttttcattggtggtaccgatttagaaaaagataaacaacgatgt
agccatcaaccacaactcattattggtacaccaacaagaattaatgatttagcacattca
ggttatcttcatgcacatttagcgtcatatttaattatagatgaagctgatttaatgatt
gacctcggtctcattgaagatgttgaccatattgcagcgagattagatgatgaaaatgct
catctagcggtatttagtgcaacaatacctaaatcattacaaccatttttaaataaatat
ttaagtcaaccagaatttgtagaagttgatggcaaagctcataataaagaaaatatcgaa
ttttatctaattcctacaaaaggttctgctaaggtagataaaacattggaattgatagat
atattgaatccttatctatgtattattttctgtaacagtcgtgaaaatgccgatgaattg
gcagacactttaaataaagaaggaattaaaataggtatgattcatggtggtttaacacca
agagaacgtaaacaacaaatgaaaagaataagaaatttagattttcaatttgtcattgca
agcgatcttgcttctagaggaatagatattgaaggcgtaagtcatgttattaatttcgat
gtacccaatgatatcgatttcttcacacatcgcgtaggtcgaacaggaagaggtaattat
aaaggtgtagccattacattatatagtcctgatgaagaaagtaatattactcttattgaa
gacagaggttataaatttgaaaatgtagatattaagaatggtgaattaaaaccgataaag
gcatacaatatgcgtaaatcaagacagcgcaaagatgaccatttaacaaatgaagttaaa
cacaaagtaagaagtaaatcaaaacgtaaagttaaaccaggctataaaaagaagtttaaa
caagaagttgaaaaaatgaaacgtcaagaaagaaagcagtatagtaaaaagcaaaataga
caaaaacgaaaaaataataaaggatag
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