Staphylococcus epidermidis ATCC 12228: SE_1366
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Entry
SE_1366 CDS
T00110
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sep
Staphylococcus epidermidis ATCC 12228
Pathway
sep03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SE_1366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sep03400
]
SE_1366
Enzymes [BR:
sep01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SE_1366
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SE_1366
DNA repair and recombination proteins [BR:
sep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SE_1366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zf_2nd_IFT121
DZR
Zn_ribbon_Nudix
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AAO04965
UniProt:
A0A0H2VGP5
LinkDB
All DBs
Position
complement(1395022..1395894)
Genome browser
AA seq
290 aa
AA seq
DB search
MPELPEVEHVKRGIEPFIKSAKIEKVTFAKNVINGKNNNRETIIKGMELDTFKKLTEGYV
IKKVERRSKYIIFYIADHDDDRILVSHLGMAGGFFVVNNLDEISTPNYRKHWQVIFDLDN
KQKLVYSDIRRFGEIRNIVNFDSYPSLLEIAPEPFEEVAFEHYLECLTMKKYKNKPIKQT
ILDHRVIAGAGNIYACEALFRAGITPDKITNSLTKQERKSLFYYVREVLEEGIKYGGTSI
SDYRHADGKTGQMQLHLNVYKQKKCKVCGHSIETKVIAGRNSHFCPNCQR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacctgaagttgaacatgttaaaagaggtattgagccatttataaaaagt
gcaaaaatagagaaagtaacttttgctaaaaatgtaattaacggtaagaataataaccgt
gagacgattataaaaggtatggaattagatacttttaaaaaacttactgaaggttatgtt
ataaaaaaagttgaaagaagaagtaagtacattattttttatatagcggatcatgacgat
gatagaatcttagttagtcatttaggtatggcaggcggattctttgttgttaataacctt
gatgagataagtacaccgaattatcgaaagcattggcaagtcattttcgatttggataat
aaacaaaaattagtctattctgatatcagacggtttggagaaattagaaatatagtcaat
tttgatagttatccatctttattagaaatcgctccagaaccatttgaagaggtggcattt
gaacactatttagaatgtttgacaatgaaaaaatataagaataaaccaataaaacaaacg
attcttgatcatcgtgttatagcaggagctggaaatatctatgcctgtgaagctttattc
agagctggtattactccggataaaattactaattcactcactaaacaagaaagaaaatcc
ctcttttattatgttcgagaagttttagaagagggtataaaatatggaggtactagtatt
tcagattataggcatgcagatggtaaaactggacaaatgcaattacatttaaatgtatat
aaacaaaaaaagtgcaaggtttgtggtcattcgattgaaacaaaagtgatagctggtaga
aatagtcatttttgcccaaactgtcagagataa
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