Staphylococcus epidermidis ATCC 12228: SE_1679
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Entry
SE_1679 CDS
T00110
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sep
Staphylococcus epidermidis ATCC 12228
Pathway
sep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SE_1679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sep03019
]
SE_1679
03009 Ribosome biogenesis [BR:
sep03009
]
SE_1679
Enzymes [BR:
sep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SE_1679
Messenger RNA biogenesis [BR:
sep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SE_1679
Ribosome biogenesis [BR:
sep03009
]
Prokaryotic type
rRNA helicases
SE_1679
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HyfI_C
CMS1
DUF4928
AAA_30
Flavi_DEAD
Cas3-like_C_2
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AAO05278
UniProt:
Q8CRP6
LinkDB
All DBs
Position
complement(1735734..1737263)
Genome browser
AA seq
509 aa
AA seq
DB search
MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL
IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGP
QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN
RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ
ELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNRRSKGSKGQSSKKK
NQKKFDRRDKQQKSGNQSLKGRTFADHQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaactagggatttcggataaaacggttcaaacactagaagcaatg
ggatttaaagaaccgacacctatccaaaaagatagcatcccttatgcgttagaaggagat
gacatccttggacaagcccaaactggtactgggaaaacaggggcgtttggtataccttta
attgagaaagttgtaggccaacagggtgttcaatcattaattcttgcgccaacgagagag
cttgctatgcaagtagctgagcaattaagagagttcagtaaaggtcaaaaagtacaagtt
gttacagtctttggtggtatgcctattgaaagacagattaaagtattaaaaagaggccct
caaattgtagtaggtacgccgggaagagttattgatcatcttaatcgtcgtacacttaaa
actcaaggaattcacacgcttattttagatgaagcagatgaaatgatgaatatgggattc
atcgatgatatgagatttattatggataaaattccagctgaacaacgtcaaactatgcta
ttttcagctacgatgccaaaagcaatccaagaattggtacagcagtttatgaaagctcct
aaaataattaagacaatgaataatgaaatgtcagatcctcaaattgatgaatattataca
atagttaaagaattagagaaatttgatacatttacaaactttttagatgttcatcagcct
gaattggcgattgtctttggtcgtactaagcgtcgcgtagatgaattaacaagcgcgcta
ttatctaaaggatacaaagcagaaggtttacatggtgatattacccaagcaaaacgttta
gaagtattgaagaaatttaagaacgatcaaatagatattttagttgctacagatgtggct
gcacgtggtcttgatatttctggtgtgagtcatgtttataattttgatatccctcaagat
acagaaagttatactcaccgtattggacgtactggtcgagcaggaaaagaaggtattgca
gttacttttgtaaatccaattgagatggattatattcgacaaattgaagatgtcaataat
cgtcgaatgaaagcattaagacctccacatcgtaaagaggtgcttaaagcgcgtgaagat
gatattaaagatagagttcaaaactggatgtcaagagaaaatgagccgcgtttacaaaga
atatcaagtgaattacttaaagaatatgatagtacagaattagtagcctctttacttcaa
gaacttgtagaagctaatgatgaagtggaagtacaattaacttttgaaaaaccattagca
cgtaaaaatcgcagtagtaaaggcggttctagaagaagtaatcataaacgtggtaatggt
aagtttgataataaaaatagacgatcaaaagggtctaaaggtcaatcaagcaaaaagaaa
aaccaaaagaaatttgaccgtagagataagcaacaaaaaagtggtaatcaatcactaaaa
ggtcgcacatttgcagatcatcaaaaataa
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