Candidatus Southlakia epibionticum: SEML1_0296
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Entry
SEML1_0296 CDS
T11187
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sepb Candidatus Southlakia epibionticum
Brite
KEGG Orthology (KO) [BR:
sepb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sepb03032
]
SEML1_0296 (topA)
03400 DNA repair and recombination proteins [BR:
sepb03400
]
SEML1_0296 (topA)
Enzymes [BR:
sepb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SEML1_0296 (topA)
DNA replication proteins [BR:
sepb03032
]
Prokaryotic type
DNA Topoisomerases
SEML1_0296 (topA)
DNA repair and recombination proteins [BR:
sepb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SEML1_0296 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WIO45926
LinkDB
All DBs
Position
complement(284458..286842)
Genome browser
AA seq
794 aa
AA seq
DB search
MKNLVIVESPAKAKTIEKYLGHDFHVLSSVGHIRSIAKKTKDGTPPIDVAHDFKTIYEID
PEKKKIITELKKAVKAVGAANVWLATDEDREGEAIAWHLCEVLNLDPATTKRITFHEITK
PAIEAAIQHPRTVDMKLVEAQQARQILDRLVGFELSPVVWQKVPGGKSAGRVQSPAVRLL
VEREHEIEQFAGSFQFKVTAVFVYDGQEVKAELKQRFDTEADAHAFLESLNNAKYTIDDI
KTSPSTRNPAAPFTTSTLQQEANAKLGMSSRATMASAQKLYQEGHITYMRTDSVNLSGQA
IAASADYIKRLYGIEYSHVRTFKTKSAGAQEAHEAIRPTDVTRESVSGNGYDQKLYDLIR
RRTLASQMASAKIKNTTATIRIEQADTKQAINSTANVDNLVFEAKGHTIVFDGFLRVYGG
GKDDAILPTFTAGDLVREYSMEARQVFARPPARYTEGTLVKKLEELGIGRPSTYATIMNT
IQTRGYAERGESEGEPRDIIVLQRIDGNVERSIQTEKTGSTRGKLVPTPAGELISGFLTD
HFKPVVDYGFTANVEKDFDDIASDKLTRNAMLHNFYEPFHARIEQSGAIDRSKVGDSRDI
GTDPKTGKPIIARFGRFGPMLQLGSTDSDEKPHFAPLPRGTKISTVTLEQALKAFELPRL
VGTTEDGQDINANIGRFGPYIQVGKLYVSLKEDDPREITEAKARELYAAKLQVEAEKHIA
DFGDVKVLNGRFGPYVTDGKKNAKIPKDIDPKTITAEQAREMIAAAPAKRARGRRSTAQK
AGKPRTSSAKAKKK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacctcgttatcgtcgagtcgccggcaaaagcaaaaaccattgaaaaatatctt
ggacatgatttccatgttttgtcaagcgtaggacacatccgttctattgcaaaaaaaacc
aaagacggcacaccgccgattgacgtcgcgcacgatttcaaaactatatacgaaattgac
cccgaaaagaaaaaaattatcaccgagctaaaaaaagccgtcaaggcagtcggcgcagca
aacgtctggctcgctaccgatgaagaccgcgaaggggaggcaatcgcttggcatttatgc
gaagttttgaatcttgaccctgccaccactaagcgcattacctttcacgaaatcaccaaa
ccggcaattgaggcagcgatccaacacccgcgcactgttgacatgaagctcgttgaagcg
cagcaggcgagacagattttagaccgcctcgttggctttgaactaagccctgtcgtctgg
caaaaagtcccaggcggtaaatccgccggacgcgtgcagagtccggctgtacgcctgctg
gttgagcgcgagcatgaaattgagcaattcgcgggcagttttcagttcaaggtcactgcc
gtatttgtatacgacgggcaagaagtcaaagccgagcttaagcagcggttcgacaccgaa
gctgatgcacacgccttcctagagtcattgaacaacgcaaaatacaccattgacgatata
aagacatcgccgtcaacccgcaaccctgccgcgccattcaccaccagcacgttgcagcaa
gaagccaacgctaagctaggtatgagcagccgcgccaccatggcaagcgcgcaaaagtta
tatcaagagggacacatcacatacatgcgtaccgacagcgtaaacctatcaggacaggca
attgccgctagcgccgattacatcaagcggctctacggcattgaatacagccacgtccgc
acattcaaaacgaaatctgccggcgcgcaagaagcccacgaagcgatccgcccaaccgat
gtcacgcgcgaatcggtcagcggcaacggctacgaccaaaagctctacgacctcatccgc
cggcgtacactcgccagccaaatggcatccgccaaaataaagaacacaacggcgacgatc
cggatcgaacaagcagacaccaagcaagcgatcaatagtactgctaatgtagacaacctc
gtttttgaagctaaagggcacaccatcgtcttcgacggcttcttgcgcgtttacggcggc
ggcaaagacgatgcaatcctaccaacattcaccgctggcgatcttgtgcgcgaatattcc
atggaggcgcgccaagtctttgcccgtccgcctgcgcgctatactgaaggtacgctcgtt
aagaaacttgaagagctcggtatcggccgcccaagcacctacgccacgatcatgaataca
atccaaacacgcggttacgctgaacgcggcgaatccgaaggcgagccgcgcgacattatc
gtgctgcagcgtattgatgggaatgttgaacgcagcatccagaccgaaaaaaccggctcg
acccgaggcaaactcgtaccaacgccagcgggcgaactcattagcggctttcttaccgat
cactttaagccagttgttgattacggttttactgccaacgtcgagaaagatttcgatgac
atcgcgagcgataaattaacgcgcaacgccatgctgcataacttttacgagccgtttcat
gcccgcatcgagcaatcgggcgcaattgaccgcagcaaggttggcgattcgcgcgacatc
ggtactgacccaaaaaccggcaagccgatcatcgcgcgcttcggacgcttcgggccgatg
ctccagctcggcagcaccgatagcgacgagaaaccacacttcgcgccactgccgcgtggt
acaaaaatcagcaccgtcacattagagcaagcactcaaagcgttcgagctgccgcggctt
gtcggcacgaccgaggacgggcaagatattaacgccaatatcgggcgcttcggaccatac
attcaagtcggcaagctatatgtcagcctaaaagaagatgacccgcgcgaaattaccgaa
gcaaaagcacgcgagttatacgccgcaaaactgcaagtcgaagccgaaaaacatatcgcc
gattttggcgatgtcaaagtactcaacgggcgcttcggaccatacgtcaccgatggtaaa
aagaacgcaaaaatcccgaaagacatcgacccgaaaacaatcacagccgaacaagcacgc
gagatgattgccgctgcacccgccaaacgtgcgcgcggacggcgcagtactgcgcaaaaa
gccggcaaaccgcgcacttcatcagcaaaggcaaagaaaaagtag
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