Candidatus Southlakia epibionticum: SEML1_0375
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Entry
SEML1_0375 CDS
T11187
Name
(GenBank) RsmD family RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sepb Candidatus Southlakia epibionticum
Brite
KEGG Orthology (KO) [BR:
sepb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sepb03009
]
SEML1_0375
Enzymes [BR:
sepb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SEML1_0375
Ribosome biogenesis [BR:
sepb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SEML1_0375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
MTS
TRAM
Motif
Other DBs
NCBI-ProteinID:
WIO46002
LinkDB
All DBs
Position
complement(359409..360758)
Genome browser
AA seq
449 aa
AA seq
DB search
MVKQPRYETVTLEKIVGGGQALGTLSDGRKCFVWGGLPDETVTFRVTKKKAHFIEGIVTE
VLHASPERIAPRDASSYLSTSPWQIMTFSAEQNYKAALIKEAFELHNVVLPHKIDVYTDR
RKFQYRNKVEFSWFSERAGESYPDTLDLAFFRRGSKGKIIVNECSLLPSGIITLAHSIRD
LLHRKHISARQLKTLLIRSNQQGSCVWQLYIKDRLPNIITREETEMLPAQGGEIIYSDPR
SPASRITARLAKFGDTTLTDTVLGTPFRYACEGFFQVNIPVYEQALRDMQEWVSYPKCTT
LANNDTGGENLPVIDLYAGVGTIGLTIGGDNATLIEINESAVAEMQRNITALGRANARAV
LAPSEKALDFITPNHVVIVDPPRAGLHADVIAKLLETAPPRIIYLSCNPVTQARDTALLT
EEYNIRAHRGYNFFPRTPHIEHLVVLDRK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtggtgaaacaaccacgatacgaaacagtaacgctcgaaaagattgtcggtggcgggcaa
gcgctcggaacactaagcgatggacgcaaatgtttcgtgtggggtggattgccagacgaa
accgtgacatttcgcgtaacaaaaaagaaagcgcactttattgaaggcatcgtcaccgaa
gtcctacacgcctcgcccgagcgtattgcgccgcgcgacgccagcagctacctgagtaca
agcccgtggcaaattatgacgtttagcgctgaacaaaattacaaggcagcgttgatcaag
gaagcctttgagctgcacaacgttgtactgccgcacaaaatagacgtgtacaccgatagg
cgcaaatttcagtatcgcaataaggtagaatttagctggtttagcgagagagcaggcgaa
tcgtaccccgatacgcttgacctcgcgttcttccgccgcggcagcaagggcaaaattatc
gtcaatgaatgcagtttgttgccgtctggaatcattacgctcgcgcatagtatccgcgac
ttgctacaccgcaagcacatctccgcgcgccaattaaaaacattactcattcgcagtaac
cagcaagggagctgcgtttggcagctgtatataaaagataggctgccaaatatcatcaca
cgcgaagaaacagaaatgttgcccgcgcagggcggggaaatcatctattctgacccacgc
agtccagctagccgcatcaccgcacgcctcgcaaaatttggcgacactacactcaccgat
acggttcttggcacgccattccgctacgcctgcgaaggattctttcaggtaaatatacct
gtgtacgagcaagctttgcgtgatatgcaagagtgggtttcctatccaaaatgtacaacg
cttgctaataatgacaccggcggagagaacctcccagtaattgacctttacgctggcgtc
ggtacgatcgggttgactatcggcggtgataacgccacgctcatcgaaatcaatgagtcc
gccgtcgctgaaatgcagcgcaatattaccgccctcgggcgcgccaatgcccgcgctgtc
ctcgctcccagtgaaaaagctctcgacttcatcacccccaaccacgttgttatcgttgac
ccgccgcgcgccggcttgcacgccgacgtcatcgccaaattactcgaaactgcgccgccg
cgcattatctacctcagctgcaaccccgttacccaagcccgcgacaccgctctcctcacc
gaggagtacaacatccgcgcccaccgcggctacaactttttcccgcgcacgccgcatatt
gaacatctggttgtgttagatagaaaataa
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