Candidatus Southlakia epibionticum: SEML1_0447
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Entry
SEML1_0447 CDS
T11187
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sepb Candidatus Southlakia epibionticum
Pathway
sepb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sepb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SEML1_0447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sepb03021
]
SEML1_0447
03400 DNA repair and recombination proteins [BR:
sepb03400
]
SEML1_0447
Enzymes [BR:
sepb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SEML1_0447
Transcription machinery [BR:
sepb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SEML1_0447
DNA repair and recombination proteins [BR:
sepb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SEML1_0447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RNA_pol_L_2
RAD51D_N
SAM_EPH
Calmod_bind_M
Chap-C
Motif
Other DBs
NCBI-ProteinID:
WIO46068
LinkDB
All DBs
Position
complement(427501..428424)
Genome browser
AA seq
307 aa
AA seq
DB search
MSKVIHNPALAQIIDNSEFSSTFIVEPLHVNYGNTLGNSLRRVLLSSIRGGAVVAFRIEG
ATHEFTTVPGIKEDVVDIMLNLKGVNFRIATDEPVELRLEKHGAGEITAADIQANADVEV
MNPDHVICTVDDDSRTTVFDLVVESGRGYQTIEESSEKRLHSDMIAVDAMFSPVTRVRFK
VDPTRVGQETNLDKLELTIETDGSLTPREAFEEAAAILVNQYSALAGSTKVEAAPALGTE
AKDDVDELDRSIEDLGLSARTVNALTNNGIRTVRDLVTLSEQDLRELRGFGSKALDEVKD
KLAELEL
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtaattcacaatccagcacttgctcagattattgataatagcgagttttcg
agtacgtttattgttgagcctctgcacgtcaattacggcaacacgctcggtaatagcttg
cgccgcgtgctgctttcaagcatccgcggcggtgccgtcgtggcatttcgcatcgagggc
gcaacgcacgagtttacgaccgttccgggcatcaaagaagatgtcgtcgacatcatgcta
aacctcaaaggcgtgaatttccgcattgcgaccgacgagcctgttgagctgcgcctcgaa
aagcatggcgcgggtgaaatcactgccgctgatattcaagcgaacgctgatgttgaggta
atgaatccagatcatgtcatctgtactgttgacgatgacagccgaacgaccgttttcgat
ctcgtggttgaatctggacgcggctaccaaacgattgaagaatcaagcgaaaagcgtttg
catagcgatatgatcgctgtcgacgcaatgtttagcccggtgacacgcgtgcggtttaag
gttgacccgacccgcgttggtcaagagacgaaccttgacaaactggagcttacgatcgaa
accgacggctcgctcacgccgcgcgaagcgtttgaggaagctgccgcaattttagtaaac
caatatagcgcgctggcgggcagtacgaaagttgaagccgcaccggcgcttggcactgag
gctaaagacgacgtagacgagcttgaccggtcaattgaagacctaggcttgagtgctcgt
acggtaaacgcgcttactaacaatggtatccgcacagttcgtgacttagtcacgctcagc
gagcaagatctgcgcgaactcagagggttcggcagtaaagcgcttgacgaagttaaagat
aaattagcagaattggagctctaa
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