Candidatus Southlakia epibionticum: SEML1_0490
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Entry
SEML1_0490 CDS
T11187
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sepb Candidatus Southlakia epibionticum
Pathway
sepb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sepb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SEML1_0490 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sepb03021
]
SEML1_0490 (rpoC)
03400 DNA repair and recombination proteins [BR:
sepb03400
]
SEML1_0490 (rpoC)
Enzymes [BR:
sepb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SEML1_0490 (rpoC)
Transcription machinery [BR:
sepb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SEML1_0490 (rpoC)
DNA repair and recombination proteins [BR:
sepb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SEML1_0490 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Histone_HNS_N
DUF5713
DUF2681
Motif
Other DBs
NCBI-ProteinID:
WIO46111
LinkDB
All DBs
Position
complement(455664..459533)
Genome browser
AA seq
1289 aa
AA seq
DB search
MAYPVNTHGIADFDAVRLAVASPEDILKWSYGEVTKPETINYRTQKPERDGLFCERIFGP
VKDINPHDSKLKGVRSREAAVDKNGELVTKSIVRRERMGHINLAAPVAHIWFMRGTPSAM
SLLTGITVRNLERIAYFATYVILKVDEEKRDQMLADLEAETEAGRAAIKIRYEREAGVDG
ADIKQLAEEQTRELQDLEDQFNVKKSQLESLVRRALINETDYRNLPEEYEELIEVGMGGT
ALKALLDEINLSELIAKLQEEADGAKGQREKKLLKRLKVLEGMQSAGIKPSSLCLTVLPV
IPPDLRPMVSLAGGRFATSDLNDLYRRVINRNNRLKKLIDLNAPEVIRRNEMRMLQEAVD
SLIDNSAARGGRAVNAAGNRRRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPKL
KINQCGLPKQMAIELFKPFVISWLIEREYAHNIRSATRLIDAGEAVVWDALDAVIEGKYV
LLNRAPSLHRLSIQAFQPKLVEGKAIQLHPLVASGFNADYDGDQMAVHLPLSKEAQAEAR
ELMSAVNNLLKPADGSPVLNIGQDIVLGNYYLTYEKPSVQTDTVAVFADSRDAELAYDMG
ELHLQSPIRIRAKGEIRNTTLGRVFFNEILPDDFPYNNNVQTKKELKRVLAQIFDKYGAE
ETAKTADRMKGLAFRFATVAAVSTGKDDYVHFSETESFIADGDKRAAVIADQYDQGLITE
SERYNLTVGAWRTVDNSVTKLLKEKLGSMDTSISVMVNSGARGDISNVKLASAMIGIQVD
AANREIELPIRSYYTHGLSSLESFVATRGSRKGLIDTALKTADSGYLTRRLVDVSQDVFT
VEDEAGDDEGYTIYRSETEETMIDFGNRLYGRYTRDAVPGHIGENELITREVANAIDADE
AITEVKIQSILSTNNLEGVPRRSYGIDMSTNRLVDPAEPVGVIAAQSVGEPGTQLTLRTF
HNSGVAGSDITQGLPRVEELFEARNPKGQAYITEIAGTVDVWEDGHKYIVQVTPEAGRVE
RLSLEDRTPLLQDGSEVKVGDVLAEATEGAKPLIAPFDGVVETAEGTIVIASTAVSPVKY
EIPGTAQLVVSAGDRVEPGDRLTIGSLNLHDLMRLKGTEATQRYIINEVLRIYAAQGQDV
ADKHLEIIVRQMFSRVQIEDPGDSEFVMGDIVSKARVVRANKDLVAAGKEPAQYTQLLLG
ITKVSIWSDSWLSAASFQDTTRVLISAATSGRADRLHGLKENVIIGRKIPVGTGAIALNE
DEDDSPADEYAEDVEAEASNITPDVDSES
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatccagttaacacgcatggtatcgctgatttcgacgcagttcgcctggcggtg
gcgagcccggaagacattctgaagtggagctacggcgaggtaacaaagccggaaacgatt
aattaccgtacgcaaaaaccagaacgcgacggactattctgcgagcggatttttggtccg
gttaaagatatcaacccgcatgacagcaaacttaaaggcgtgcgttcgcgcgaagcggcg
gttgataaaaatggcgagttggtcacgaagtcaattgtacgccgcgaacgcatggggcat
atcaacctggcggcgccagttgcgcatatttggtttatgcgcggtacgccgagtgcgatg
agcttattgaccggcatcacggtgcgtaatctggagcgtatcgcttactttgcaacctat
gtgattttgaaggtcgacgaagaaaagcgcgatcaaatgctggctgacttggaggcagag
actgaagctggtcgtgctgcaatcaaaattcgctatgagcgcgaagcaggcgtagatggt
gcggatatcaagcaattggcagaagagcaaacacgcgagttgcaggatttggaagatcag
ttcaacgtgaagaaatcacagcttgagagcttggtacggcgcgcgttgattaacgaaacc
gactaccgcaatttgccggaagaatatgaagagctgattgaagttggtatgggcggcacg
gcgttgaaagcgttgcttgatgaaatcaacctgagcgagctgattgctaaattgcaagaa
gaagcagatggtgcaaaaggtcagcgtgaaaagaaattgctgaagcgtctgaaagtgctt
gaaggtatgcagtccgcaggaattaagccatcaagtttgtgcttgacagtgctgccggtc
attccaccagacttgcgtccgatggtttcgctcgcgggcgggcggtttgcaacgagcgat
ctaaacgatctgtaccgccgcgtcatcaaccgcaacaatcgtttgaagaagttgattgac
ttgaatgcgccggaagtaattcgccgcaacgagatgcgcatgctgcaagaagcagttgac
agcctcattgataactcagcggcgcgcggcggacgtgctgtaaacgctgcaggcaatcgc
cgccgcctgaagagcttgagcgatatgctaaagggcaagcaagggcgttttcgccagaac
ttgctcggtaagcgagtagactattcgggtcgttcagtgatcgtggttggtccgaaattg
aagatcaatcagtgtggtctgccgaagcaaatggcgattgagttgtttaagccatttgtt
attagttggctgattgaacgcgaatatgcgcacaatattcgttcagcgacgcgcttgatt
gacgcaggcgaggcggtcgtgtgggatgcgcttgatgctgtaattgagggtaaatatgtt
cttctaaatcgtgcgccatcgctgcaccgtttgagcattcaggcatttcagccaaaattg
gttgaggggaaagcgatccagctgcatccgctcgtagcaagtggttttaatgccgattac
gatggcgaccagatggcggtgcacttgccgcttagcaaagaagcgcaagctgaagcgcgc
gagctgatgagcgcggttaacaacttgttgaagccggcagacggcagtccggtgttaaac
atcgggcaggacatcgtgcttggtaattactatttgacgtacgaaaagccaagcgtgcaa
accgatacggtcgcggtgtttgccgacagccgcgatgccgagctagcatacgacatgggt
gaattgcacctgcagagcccgatccgcattcgcgctaagggcgaaatccgcaacacgacg
ctcggtcgcgtattctttaacgagattttgccggatgattttccgtataacaataacgtg
caaacgaagaaagagctgaagcgcgtgctggcgcaaatcttcgacaaatacggcgctgaa
gagactgctaaaacggcagaccgcatgaaaggcttggcgttccgatttgcgacggtggcg
gcagtatcaactggtaaggacgactatgtgcattttagcgagacagaaagcttcattgcc
gacggcgacaagcgcgcagcagtgattgctgatcagtacgatcaggggttgatcactgag
tcggagcgctataacctaacagttggcgcgtggcgtacagttgataatagcgtgacgaag
ctgctaaaagaaaagctcggcagtatggatacgagtatttccgtgatggtcaactcgggc
gcgcgtggtgatatttcaaacgtaaagcttgccagtgcgatgatcggtatccaggtggac
gccgctaaccgcgaaattgagctgccgattcgttcgtactatacgcacggtctgtcgagc
ctggaatcgttcgtggcgacgcgcggttcgcgcaagggcttgattgacacggcgctcaag
acggcagactctggatacttgacgcggcgcttagtcgatgtgtctcaagacgtattcacg
gtagaggatgaagcgggcgacgatgaaggctatacgatctaccgttcagaaaccgaggag
acaatgattgatttcggcaaccggttgtacggacgctacacgcgcgacgcagtgccgggg
catatcggcgagaacgagctaatcacgcgcgaagttgcaaatgcaattgacgccgacgaa
gcgattactgaggtgaagatccagtcgattctgtcaacgaataacctagagggcgtgccg
cgccgcagctacggcattgatatgtcgacaaaccgcctggtcgatcctgccgagccggtc
ggcgtgattgccgcgcagtcggtcggcgagccgggcacgcagctgacgctccgtaccttc
cataactctggcgtggcaggaagcgacattacgcaaggtttgccgcgtgttgaagaattg
tttgaagcgcgcaatccaaaaggacaagcgtacatcaccgagattgctggtacggttgac
gtttgggaggacggtcataagtatattgtgcaagtgacaccggaagcgggccgcgttgaa
cgattgtcgcttgaggatcgcacgccgctattgcaagacggctcggaagtaaaagtaggc
gatgtgcttgctgaagcgaccgagggcgcaaagccgttgatcgcgccgtttgatggcgtt
gtcgagacggcagagggcacgatcgtgattgcgtcgacggcagtgtcgccggtgaaatat
gagattccgggcaccgcgcagctagtcgtttcagcgggtgatcgtgttgagccgggcgat
cggctaacgatcggttcactcaatctgcatgatttgatgcgcctgaaaggcacggaagcg
acgcagcgttacatcatcaacgaagtgctgcgcatttacgccgcgcagggtcaagacgtt
gccgataaacatctggagattattgtgcgccagatgttcagtcgcgttcaaattgaggat
ccgggtgacagcgagtttgtaatgggcgatatcgtcagcaaagctcgtgtcgtgcgcgcg
aacaaggacttggttgccgcaggtaaagagccggcgcaatacacgcagttactactcggc
atcaccaaggtgagcatttggagcgattcgtggctatcggcggcatcgttccaagacacg
acgcgcgtgcttatcagtgctgctacttctggtcgcgccgatcgcttgcacggtttgaaa
gaaaacgttatcatcggccgcaagattcctgtcggtacgggtgcgattgcgctcaatgag
gacgaagacgattcgccggcggatgaatacgcggaagatgttgaagctgaagcaagcaac
atcacgccggacgttgattcggagtcatag
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