Candidatus Southlakia epibionticum: SEML1_0668
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Entry
SEML1_0668 CDS
T11187
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sepb Candidatus Southlakia epibionticum
Pathway
sepb03420
Nucleotide excision repair
sepb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sepb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SEML1_0668
03430 Mismatch repair
SEML1_0668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sepb03400
]
SEML1_0668
Enzymes [BR:
sepb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SEML1_0668
DNA repair and recombination proteins [BR:
sepb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SEML1_0668
MMR (mismatch excision repair)
Other MMR factors
SEML1_0668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WIO46277
LinkDB
All DBs
Position
complement(644421..646523)
Genome browser
AA seq
700 aa
AA seq
DB search
MDVLEGLNDAQKQAVETTAGPLLVLAGAGSGKTKTLTHRIAYLLTHERVWPNEILAVTFT
NKAAREMRERLAHLTRQENSRRFMPWMGTFHGICVRILRMDGAHIGVPQNFIIYDEDDRQ
GLIKQAMKQLSIGTDKVKPRAVSSAISNAKNDLLTPDEYAANANYPFQQSVAKIYDTYER
LRSEAGALDFDDLLIETVRLLRDVPDVRSKYRRRFKHILIDEYQDTNAAQYAIVKFLVND
ARNICVVGDDWQSIYSWRGADFKNILNFERDFPGATVVKLEQNYRSTGAILDAAQQVISK
NLERTNKTLWTSEGHGTPVQVQAVMDESEEAYVVASRITAQTSIGARDFGDFAVLYRTNA
QSFAFERAFMQQRIPYQLVGGVRFYDRKEIKDIVAYLRLLYQPNDRMSFSRIVNVPARGL
GATSVEKFLLWQAETDMDIVAALANADQTSMLTPRAKNAFMQLGDTLGALQARVMSSTNP
SEIIEQLIEKTGYRDYVLDGTPQAEEREANLGVLAADAQAFATLPDFLEEVALMSTADQA
NDAAKVTLMTLHAAKGLEFPVVFMAGMEDGLFPSERALEEGPRNLEEERRLCYVGMTRAR
QELYLTYAQSRQQFGQRSYNMPSRFLEDMGAELFAPQPARPPQPQYNEFVMNYDIGDQVR
SPQFGAGEIVDIDGLAVSVTFENGVTKKLNVEYARLEKLA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggatgttctagaggggctgaatgacgcgcaaaaacaagcggttgagacgacagccggt
ccgttgctcgttttggcgggcgctggcagcggcaaaacgaagacgctgacacatcgtatt
gcgtacctgttgacacacgagagagtttggccgaatgagattctagccgtaacgtttaca
aataaggccgcgcgcgagatgcgcgaacggttagcacatctgacgaggcaggaaaattca
cgccgtttcatgccgtggatgggaacatttcacggcatttgcgtgaggattttgcgcatg
gacggcgcgcacattggtgtgccgcagaacttcattatttacgatgaagacgaccggcag
gggctgatcaaacaggcgatgaagcagctgtcgatcggtaccgataaagtcaagccgcgc
gctgtcagcagtgcaatttcaaatgcaaaaaacgatttgctgacccctgacgaatatgcg
gcaaatgccaattatccgtttcagcagtcagtggcgaaaatttacgatacgtacgaacgg
ctgcgcagcgaggcgggcgcgcttgatttcgatgatttgctgatcgaaacagtgcgtttg
ctgcgcgatgtaccggatgtgcgcagtaagtatcgccggcggttcaaacatattttaatt
gatgaatatcaggacacgaatgcggcgcagtatgcgattgtgaaatttctggtgaacgat
gcgcgtaatatttgcgtcgtcggcgacgattggcagtcgatttattcgtggcgcggggcg
gatttcaaaaatattttgaatttcgagcgcgattttccaggcgcaaccgttgtgaaatta
gagcaaaattatcgttcaaccggtgcaattcttgatgcggcgcaacaggtcatcagcaaa
aacctagagcgcaccaataaaacgctttggacgagcgaagggcacggtacgcccgtacag
gttcaggcggtaatggacgagtcagaagaagcgtatgtcgtagcgagccggattacagcg
cagacgtcgatcggtgcgcgcgatttcggcgattttgctgtactctatcgcacgaatgcg
cagagttttgcctttgaacgcgcatttatgcagcagcgaattccgtaccagttggtcggc
ggcgtgcggttttatgatcgtaaagaaattaaagatatcgtagcgtatttacgattgttg
tatcagccgaacgatcgtatgagctttagccggattgtgaacgtaccggcgcgcgggctt
ggtgcgacgagtgttgaaaaatttttactgtggcaggcggaaacagatatggacatcgtt
gcggcgctggcaaacgccgaccaaacgagtatgttgacgccgcgcgctaaaaacgcgttt
atgcagcttggcgatacgctgggcgcattgcaagcgcgcgtgatgtctagcacgaatccg
agcgaaattattgagcagctaattgaaaaaaccggctatcgcgactacgtgcttgatggt
acgccgcaagctgaagagcgcgaagcaaatcttggcgtactcgcggcggatgcgcaggca
tttgcaacgctgccggattttttggaagaagttgctttgatgagtacagccgatcaggca
aatgacgccgcaaaagtaacgctgatgacgcttcacgccgccaaaggtttggagtttccg
gtggtatttatggctggcatggaagacggcttgtttccgagcgagcgcgcgctcgaagaa
ggtccacgcaacctcgaagaagagcgccgcctttgctacgtcggcatgacgcgggcgcgc
caggagttgtatttgacgtacgcgcagagccgccagcaatttgggcagcgctcgtacaat
atgccgtcgcgttttctagaagatatgggcgcggagctgtttgcgccgcagccagcacgt
ccgccgcagccgcaatataacgaatttgtgatgaactacgatatcggcgaccaagttcgt
tcgccgcaatttggtgcgggcgaaattgttgatatcgacggcttagcggtaagcgtaacg
tttgaaaacggtgtgacgaaaaagcttaatgttgagtacgcgcggcttgagaaactagca
taa
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