Staphylococcus epidermidis PM221: SEB_00005
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Entry
SEB_00005 CDS
T03289
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sepp
Staphylococcus epidermidis PM221
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sepp03032
]
SEB_00005
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_00005
Enzymes [BR:
sepp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SEB_00005
DNA replication proteins [BR:
sepp03032
]
Prokaryotic type
DNA Topoisomerases
SEB_00005
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SEB_00005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
TOPRIM_C
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
CDM12574
LinkDB
All DBs
Position
4589..6520
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AA seq
643 aa
AA seq
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MVNTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL
AGYASHIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS
GGLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDTDKTGTAIRFKAD
KEIFTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYHYEGGIKSYVDLLN
ENKEPLHDEPIYIHQSKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALT
RVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVD
RLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADC
SSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQM
ITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ
PPLYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHR
SMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLDF
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatacattgtcagatgtaaacaacacagataattatggtgctggacagatacaa
gttttagaaggtctcgaagcggttcgtaaaagaccgggtatgtatattggttcaacttca
gaaagagggttgcaccatttagtatgggaaattgttgataatagtattgacgaggcatta
gcaggttatgctagtcatattgaagttgtaattgagaaagacaattggattaaagttact
gacaatggccgtggtattcctgttgatattcaagaaaagatgggacgccctgctgtcgaa
gttatcttaactgtacttcacgctggaggtaaattcggaggtggcggatacaaagtatct
ggcggtcttcacggtgttggatcttcagttgttaatgcactctcacaagatcttgaagtt
tatgtacatcgtaatggcacgatttatcatcaagcctataaacaaggtgtgccacaattt
gatcttaaagaaattggcgatacagataaaacaggtacagctattcgattcaaagccgat
aaagaaatctttacagagacaacagtttataactatgaaacacttcaaaagcgtatacgt
gagcttgctttcttaaataaaggtattcaaattactttaaaagatgaaagagaagaggaa
gttagagaagactcatatcattatgaaggcgggattaaatcctatgtagatttattaaat
gagaataaagaacctcttcacgatgaacctatatatatccatcagtctaaagacgatatt
gaagtggaaattgcacttcaatataacagtggatatgcaaccaacttattaacgtatgcg
aataatattcatacatacgagggtggtacgcatgaagatggctttaaacgtgctttaaca
cgcgttttaaatagctatggtacgcaaagtaagattattaaagaggataaagatagactt
tcaggtgaagatacacgagaaggtttaacagcagtcgtatcaattaaacatggcgatcct
cagtttgaaggacaaacaaaaacaaaattaggaaactctgaagtacgtcaagttgttgat
agattattttctgaacactttgaacgtttcttatatgagaatccatctgtaggacgcatt
attgttgaaaagggtattatggcttcacgcgcacgtgtggctgccaaaaaagcacgtgaa
gttacgcgtcgtaaatcagcattagacgtttcaagcttaccaggtaaattggcagattgt
tctagtaagaaccctgaagaaagtgaaattttcttggtagaaggtgactctgccgggggg
tctactaaatctggtcgtgattcaagaacacaagccattttacctttaagaggtaaaatt
ttgaatgtggaaaaagcacgtttagatcgtatcttaaacaataacgaaattcgtcaaatg
attactgcatttggtacgggtattggaggagaattcgatatatcaaaagcacgttatcat
aaaatcgtaatcatgactgatgccgatgttgatggtgcacatatacgtacgttattactt
acattcttctatcgtttcatgagacctttaattgaagcgggctacgtttatattgctcag
ccgcctttatataaactaacacaaggaaaacaaaaatattatgtatttaacgatagagaa
ctagacaagttgaaacaagaattaaacccgtcaccaaaatggtcaattgcacgttacaaa
ggtcttggtgaaatgaacgcagaccaattatgggaaacgactatgaatcctgaacatcgc
tctatgttgcaagtgagacttgaagatgcaattgatgcagaccaaacatttgaaatgtta
atgggcgatgtagtagaaaatcgcagacaatttatcgaagacaatgcagtttatgccaac
ctagatttctag
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