Staphylococcus epidermidis PM221: SEB_00229
Help
Entry
SEB_00229 CDS
T03289
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SEB_00229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sepp03021
]
SEB_00229
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_00229
Enzymes [BR:
sepp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SEB_00229
Transcription machinery [BR:
sepp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SEB_00229
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SEB_00229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CDM12794
LinkDB
All DBs
Position
248347..251970
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFREYYDKYPNQFVAKMGAEGIKDLLE
EIDLDEELKELRDELESATGQRLTRAIKRLEVVESFRNSGNNPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVITEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNDTNEVLKAYANGYVHLHTRIGVH
ANSFNNPTFTDEQNSKILATSVGKIIFNEIIPDSFAYINEPSQANLERTTPDKYFVDPTQ
LGEGGLKEYFDNTELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVSDIVVLPDKQDILDEHEKLVERVTKQYNRGLITEDERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEVIIRPDELITPDIAKQITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASGTSRLKVEIGQ
SVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDIQYDKATAPVTETS
EEVETIE
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaataggattagcttcacctgaaaaaatt
cgctcttggtcttatggtgaagttaagaaacctgaaacaataaattaccgtacacttaag
cctgaaaaagatggtctattctgtgaaagaattttcggacctactaaagattgggaatgt
agttgtggtaagtacaaacgtgtacgctacaaaggtatggtatgtgatagatgtggcgtt
gaagtaacaaaatcaaaagtgcgtcgtgaaagaatgggtcatattgaattagcagcaccc
gtatctcacatttggtatttcaaaggaattccaagtcgtatggggctattattagatatg
tctcctagagcattagaagaagtaatatacttcgcttcatatgttgtagttgatccagga
ccaactggacttgaaaagaaaacattattatctgaagctgaattcagagaatattatgac
aagtacccaaatcaatttgttgccaaaatgggtgcagaaggtattaaagacctattagaa
gaaattgatttagatgaagaattaaaagagttacgtgatgagcttgaatctgcaacaggt
caaagattaacacgtgcgattaaacgtttagaggtagttgagtcatttagaaattctggg
aataatccttcttggatgattttagatgtattacctattataccacctgaaattcgtccg
atggttcaattagacggtggacgtttcgctacaagtgatttaaatgacttgtatcgtcgt
gttatcaaccgtaacaaccgtttgaaacgtttattagaccttggagcaccaggtatcatc
gttcaaaatgaaaaacgtatgttacaagaagcagtcgatgctttaattgacaatggtcgt
cgtggtcgacctgtaacaggaccaggtaaccgtccattgaaatctctttcacatatgctt
aaaggtaagcaaggacgtttccgtcaaaacttattaggtaaacgtgttgactattcagga
cgttcagttatcgcagttggaccaagcttgaaaatgtatcaatgtggtttaccaaaagaa
atggcgcttgaattatttaaaccattcgttatgaaagagttagttcaacgtgaaattgct
acaaacattaaaaatgctaaaagtaaaattgaacgtatggacgatgaagtttgggatgtg
cttgaagatgttataactgagcatccagtgctattaaaccgtgctccaacattacacaga
ttaggtattcaggcatttgaacctactctagtagaaggtcgtgcaattcgccttcaccct
cttgttacaactgcttataatgcagactttgatggtgaccaaatggctgttcacgttccg
ttatcaaaagaagctcaagctgaagcacgtatgcttatgcttgcagcacaaaacatccta
aaccctaaagatggtaagccggttgtaacaccatcacaagatatggttttaggtaactat
tacctaacattagagcgaaaagatgccgtgaatactggtgcaatctttaacgatactaat
gaggttttaaaagcttatgcaaatggttatgtacatctacacactcgtattggtgttcat
gctaattcattcaataatccaacgtttactgatgagcaaaatagcaaaattttagctaca
tcagtaggtaaaattattttcaatgaaattattcctgattcatttgcatacatcaatgaa
ccaagtcaagctaacctagaaagaacgacacctgataaatactttgttgatcctacgcaa
ttaggtgaaggtggactaaaagaatactttgataatacagaacttattgaacctttcaac
aaaaagttcttaggaaatatcatcgcagaagtattcaatagatttagcattactgatact
tcaatgatgcttgatagaatgaaagatttaggattcaaattctcatctaaagctggtatt
actgttggtgtttctgacattgttgtacttccagataaacaagacattttagatgaacat
gaaaaattagttgaacgtgtgactaaacaatataatcgtggtttaatcactgaagacgag
cgttacaatgcggttgtagaaatttggactgacgcaaaagaccaaattcaaggcgaatta
atgcagtctcttgagaaaactaacccaatattcatgatgagtgattctggtgcccgtggt
aatgcatcaaacttcactcaattagctggtatgcgtggtttaatggcagcaccatctggt
aagattatagaattaccaatcacatcttcattccgtgaaggtttaacggtattagaatac
tttatttctacacacggtgcgcgtaaaggtcttgccgatacagcacttaaaacagctgac
tctggttaccttactcgtcgtcttgttgatgtagcacaagatgttatcgttcgtgaagaa
gattgtggtacagaccgtggtttattagtttctgatataaaagaaggaactgaaatgatt
gaaccatttatcgaacgtatcgaaggtcgttattctaaagaaacaattcgccatcctgaa
acagacgaagtaattattcgtccagacgaattaataacaccagatattgcaaaacaaatc
actgatgcaggtattgagcaaatgtatatacgctcagcatttacatgtaacacacgtcat
ggtgtatgtgaaaaatgttatggtaaaaaccttgctactggtgaaaaagttgaagtgggt
gaagcagttggtacaattgccgctcaatctatcggtgaaccaggtacccaacttacaatg
cgtacattccacactggtggggtagcaggaagtgacatcactcaaggtcttcctcgtatc
caagaaatctttgaggcacgtaatccaaaaggtcaagctgtgattactgaaatcgaaggt
gtagttgatgatattaaattagcaaaagatcgccaacaagaaataattgttaaaggtgct
aatgaaactagatcttatctagcatcaggtacttcaagacttaaagttgaaataggtcaa
tctgttgaacgtggtgaagttctaacagaaggatcaattgaacctaaaaactatttatct
gtagcaggcctaaatgcaactgaaagttacctattaaaagaagtacaaaaagtttaccgt
atgcaaggtgttgaaattgacgacaaacacgttgaagttatggtaagacaaatgttacgt
aaagttcgcatcattgaggctggtgacactaaattattaccaggttcattagttgatatt
cataactttactgacgctaacagagatgcattcaaacatcgtaaacgtccagctacagct
aaaccagtattacttggtattactaaagcttctctggaaactgaaagcttcttatcagca
gcttcattccaagaaacaacacgtgtgcttactgatgcagctattaaaggtaaacgtgat
gatttacttggtcttaaagagaatgttattattggtaagttaattcctgctggtactggt
atgagacgttacagtgatattcaatacgataaagctactgcaccagtaacagaaacaagt
gaagaagttgaaacgatagaataa
DBGET
integrated database retrieval system
