Staphylococcus epidermidis PM221: SEB_00457
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Entry
SEB_00457 CDS
T03289
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SEB_00457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_00457
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SEB_00457
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SEB_00457
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA
Kinesin
AAA_22
DUF87
AAA_16
AAA_7
AAA_25
UB2H
HerA_C
TrwB_AAD_bind
UFL1
Motif
Other DBs
NCBI-ProteinID:
CDM13019
LinkDB
All DBs
Position
479240..481225
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AA seq
661 aa
AA seq
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MVEHVPFKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGK
PTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDE
IDQLRHSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVD
VQYSRNDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIRER
EHFTIFPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMR
EMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARK
QVLIDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDEMVEQIIRPTGLL
DPKIDVRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTI
GRAARNDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISA
TVESDETNQQQQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggtagaacatgttccatttaagttaaagtctgaatttgagccacaaggtgatcagcca
caagcgatacaaaaaattgtggatggcgtaaatgaagggaaacgtcatcaaaccttatta
ggtgcaactgggacaggtaaaacttttactatgagtaacgtaattaaagaggttggtaaa
cctacacttattattgcacataacaagacattagcaggtcaactatatagtgaatttaaa
gaatttttcccagaaaatagagttgaatatttcgttagttattacgactactatcaacct
gaagcatacgtgccttcaacagatacctttattgaaaaagacgcctccattaacgatgaa
attgaccaactacgacattctgctacaagttctttatttgaacgtgatgatgtcattatt
atcgcaagtgttagttgtatctatggtttaggtaatccggaagaatataaaaatttggtt
gttagtgtacgtgttggtatggagatggaacgaagcgaattgttgagaaagttagttgat
gtacaatactcacgtaatgacatagattttcaacgtggtacatttagagtgcgtggagat
gttgttgaaatattcccagcttctagagaagaaatgtgtattcgcgtagaattttttgga
gatgaaattgatcgtatcagagaggttaactatttaactggtgaagtaattcgagaacgt
gaacattttacaattttcccagcttcgcacttcgttactcgtgaagagaaaatgaaagta
gctattgaacgtatagaaaaagaattagaagagagactaaaagaattacgtgatgagaat
aaattattagaagctcaaaggttagaacaacgtactaactatgatttagaaatgatgaga
gaaatgggcttttgttcaggtattgaaaattattctgttcacttaactttaagaccatta
ggttcaacaccatatacattgcttgattattttggagatgattggcttgtcatgattgat
gagtctcacgttacgttacctcaaattcgtggtatgtacaatggggatagagctcgtaaa
caagtattaatagaccatggatttcgtttgccaagtgcgttggataaccgaccattaaaa
tttgaagaatttgaagaaaaaacaaaacaacttgtttatgtttcagctacaccaggccca
tatgagttagaacatacagatgaaatggttgaacaaattatacgacctactggtttactt
gatcctaaaattgatgtgcgtccaactgagaatcaaatcgatgatcttttaagtgaaatc
caagatcgcgttgacaaagatgaacgtgtacttgtgacaacacttactaaaaaaatgagt
gaagatttaactacatatatgaaagaagcggggattaaagttaattatttacactcagaa
attaaaacattagaacgaatagaaattattcgagacttacgtatgggtacttacgacgca
atagttgggatcaatctgctgagagagggtatagatatacctgaagtatctttagttgta
attttagatgcagataaggaaggcttcttacgttctgatagatctcttattcaaactatt
gggcgagcagcacgtaatgacaaaggagaagtcattatgtatgcggataaaattacagat
tctatgcaatatgcaatagatgaaacacaaagacgtagagaaatacaaattgctcataac
aaagaacatggcatcacgccgaaaacaattaacaaaaagattcacgacgtcattagtgct
actgtggagagcgatgagacaaatcaacaacaacaaactgaattacctaagaaaatgaca
aagaaagaacgtcaaaaaacaatagaaaatatagaaaaagaaatgaaaaaagcagccaaa
gatttagatttcgaaaaagcaacagagttaagagatatgttatttgaattaaaagcagaa
gggtga
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