Staphylococcus epidermidis PM221: SEB_00643
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Entry
SEB_00643 CDS
T03289
Name
(GenBank) ATP-dependent nuclease, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
sepp
Staphylococcus epidermidis PM221
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_00643
Enzymes [BR:
sepp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SEB_00643
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SEB_00643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
AAA_12
CompInhib_SCIN
KxDL
GxGYxYP_N
Motif
Other DBs
NCBI-ProteinID:
CDM13204
LinkDB
All DBs
Position
635797..639453
Genome browser
AA seq
1218 aa
AA seq
DB search
MIPTKPHDVIWTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLV
VTFTNLSAREMKHRVDKRIQEASFKDPNNEHLKNQRIKIHQAQISTLHSFCLKLIQQHYD
VLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQFRSIIK
QLYFFSIANPQPFEWLNQLAQPYKEENKQQQLMQLINDLAMIFMKAGYEELQKSYDLFSM
MESVDKQLEVIETERMFITKAIEGKVLNTDVITQHEFMSRFPAINSKIKEANEGMEDALN
EAKQHYDKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSR
NILDFSDYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCIKTGE
EHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGLRIDLSQNFRSRQEVLST
TNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSENSDLTGSEQEAN
YIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQARNLQQAFKNNDIPFHVNSK
EGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEEELAEIRVVSPHDDYFYQS
IKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQPVYQLIDKFYNDHFVIQYFSGLIGG
KGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELIDRKKDFGEENVVGPNDNVVRMMTI
HSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYGLGMDYFDVNKDMAFPSLASVAYRA
INEKELISEEMRLIYVALTRAKEQLILVGRVKDEKSLIKYEQLAVSDTHIAVNERLTATN
PFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKPRVSIVIDHYENVSTEEVVNDNEIR
TIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKPSKQSVSELKRQLETEESNTNYDRV
RQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQHLPFREQRLTKDELFQYIDRLIDK
QLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYTELPFVVNQIKVDGLTSEDEDVSII
QGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIGNQLKEKYQIQMTYYRNTLETILKR
PVKGYLYFFKFGTLEIDD
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgattccaactaaacctcatgatgtgatttggacagatgcacaatggcaaagtatttat
gcgaaaggacaggacatacttgttgctgctgcagcaggttccggtaaaacagccgttcta
gttgagcgtattatacaacgtatactaagagatgatgtagatgtagatcggttactagtt
gtaacatttacgaatttaagcgcacgtgagatgaagcatcgagttgataaacgtatacaa
gaagcatcttttaaggatcctaacaatgaacatttaaagaatcagcgaatcaaaattcat
caagcacagatttctactttacacagtttctgtttgaaattgattcagcagcattatgat
gtattagatatcgatcctcattttagaacaagtagtgaagcggaaaatatattattatta
gaacaaactattgatgatgttttagaacaacactatgataaattagatcctcactttata
gaattaaccgaacaactatcatcagataggaatgatgatcaatttagaagtattattaag
cagttatattttttcagtattgctaatcctcaaccatttgaatggctcaatcaattagcg
caaccatacaaagaagaaaataaacagcaacaattaatgcagcttatcaatgatttagca
atgatttttatgaaagcaggatatgaggaattacaaaaaagttatgacttattctcaatg
atggaaagtgttgataagcagcttgaagttattgaaaccgaacgcatgtttattactaaa
gctattgaaggtaaagtattaaatacagatgttatcacgcaacatgaatttatgagtcgt
tttccggcaataaatagcaagataaaagaagcaaatgaaggcatggaagatgctttaaat
gaagcaaaacaacattatgataaatataaatctttagttatgaaagtaaagaatgattat
ttttctagaaatgcagaagatttgcaaagagatatgcaacaactcgcacctcgagtggct
tatttagctcaaatagttcaagatgtgattcaatcatttggtgttcaaaaacgaagtcgt
aatattttggatttttcagattatgaacattttgcattacgcattcttactaacgaagat
ggctcaccttcgcgtatcgctgaaacgtatcgtgaacattttaaagaaatcctagttgat
gagtatcaagatactaatagagtgcaagaaaaaatattatcttgtattaaaactggtgaa
gaacacgatggtaacttgttcatggttggggatgtgaagcagtctatttataaatttaga
caagctgatcctagtttatttattgaaaaatataatcgcttttctagtagtggaaatgaa
agtggcttgcgcattgacttatcgcaaaactttcgttcgagacaggaagtgttatctaca
accaattacttgttcaaacatatgatggatgaacaagtaggagaaatttcatatgatgat
gcagcgcaattgtattttggtgcaccatatgacgaagtttcacatcctgttcaattacga
gcacttgttgaggcaagttcagaaaatagtgacttaactggaagtgaacaagaagcgaat
tacattgttgaacaagttaaagatattattaatcatcaaaacgtatacgatatgaaaaca
ggtcaatacagaaaagcaacatataaagatatcgtaattttagagcgaagttttggtcaa
gcgcgtaatcttcaacaagcttttaaaaataatgatatcccttttcacgtaaatagtaag
gaagggtattttgagcaaactgaagtacgtcttgtgctttcatttttaagaacaatagat
aatccacttcaagacatttatttagtgggattgatgcgttctgtaatatatcaatttact
gaagaagaattagctgaaataagagttgtaagccctcatgatgattacttttatcaatct
ataaaaaattatatgattgatgaaaaagctgattctagattggttgacaagttaaatcgt
tttattcaggatatacaaaaatatcaaaattatagtcaaagtcaaccggtttaccaatta
attgataaattttataatgatcattttgtaattcagtactttagcggtcttattggaggt
aaaggtagaagagcaaatctgtatgggctatttaataaagctgttgaatttgaaaattca
agtttcagaggtttattccaatttattcgttttattgatgagcttattgatcgtaaaaaa
gattttggtgaagaaaatgtcgtaggtcctaacgataatgtggttagaatgatgacgatt
cacagtagtaaaggattagaatttccatttgtaatttactcaggattatctaaaaaattc
aacaaaggtgacctgaatgcaccagttattctaaatcaacaatatggtttaggtatggat
tattttgatgtaaataaagatatggcttttccttcacttgcctctgtggcatatagagca
ataaatgaaaaagaacttatatcagaagagatgcgtttaatctatgttgcgttgacacga
gcaaaagagcaacttattttagttggaagagtcaaagatgaaaagtcgttaattaaatat
gaacaattagctgtttcagacacacatatagcagttaatgaacgccttactgctaccaat
ccatttgttctaatttatggtgttttggctaagcatcaatcgccttcattgccaaatgat
caaagatttgaaagagatattgatcaattaaattctgaagtgaagccacgtgtatcaata
gtgattgatcattatgagaatgtttcaactgaagaagtagtcaatgataatgaaataaga
acaatcgaagaattaaaggccataaatactggtaatgaagatgtgaaaattaaaattcat
caacagctttcttatgactatccttttaaagttaacacgatgaaaccatctaaacagtcg
gtatcagagttaaaacgtcaattagaaactgaagaaagtaatacaaattatgatagagta
cgtcaatatcgtattggtgttgcatcatatgaaagacccaagtttcttacccaaacaaaa
aaaagaaaagcaaatgaaatagggactttaatgcatacagtcatgcaacacttacctttt
agagaacaacgtttaacaaaagacgaattatttcaatatatcgatcgattgattgacaaa
caacttattgatgaagatgcaaaagaggatattagaatagatgagattatgcatttcatt
gatggccctctctatatggaaatagctcaagctgacaatgtttatactgaattacctttt
gtggtaaatcaaattaaagttgatggacttacaagtgaagatgaagatgtatccattatt
caaggtatgattgatttaatatatgaaagtgacggacaattttactttgttgattacaaa
acagatgcttttaatagaagaaaaggtatgagtgatgaagaaatagggaatcagctcaaa
gaaaaatatcagatacaaatgacgtattatcgaaatactttagaaaccatacttaaacga
cccgtaaagggttacttatattttttcaaatttggtacattagaaatagatgattaa
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integrated database retrieval system
