Staphylococcus epidermidis PM221: SEB_00763
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Entry
SEB_00763 CDS
T03289
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising, CPSF 73 kDa analog
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SEB_00763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sepp03019
]
SEB_00763
Messenger RNA biogenesis [BR:
sepp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SEB_00763
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CDM13323
LinkDB
All DBs
Position
complement(762899..764581)
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AA seq
560 aa
AA seq
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MKQLHSNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLIRNKLEEHHLLRTTELH
EIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGEPANIAK
MAQLGHEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGVQCGVDEDNVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKGDVISKLNSNKDIQWHQIKSSIIETLHPYLY
EKTARKPMILPVIMKVNEDK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaactacattcaaatgaagtaggtgtatatgcacttggtggtttaggtgaagtt
ggaaaaaatacctatgctgttgagtacaaagatgaaattgtaatcattgatgctggaatc
aaattccctgacgataatctgttaggaattgattatgtaattcctgattacacttactta
gaacagaaccaagataaaattgtcggtctgtttattactcatggacacgaagaccatata
ggtggtgtgcccttcctattaaaacaaattaatgtacctatttacggtggtccattagca
ttaggtctcattcgcaataaactagaagaacatcatttgcttagaacgactgaattacat
gaaatagatgaaagtagcgtaattaagtctaaacattttgaaatttctttctatctaacc
acacatagtattccagaagcatatggcgttatagtcgatacacctgaaggtaaaattgtt
catacgggagacttcaaatttgactttactcctgtaggtgagcctgctaacatagctaaa
atggctcaattaggtcatgaaggtgtgttgtgcttactatcagactcaacaaacgcacta
gttccagattttactttaagtgaacgtgaagttggacagaatgtcgataaaattttcaga
aattgtaaggggcgtattatctttgcaacttttgcttctaatatttatcgtgttcagcaa
gcagttgaagcagcaattaaatataatcgtaaaatcgttacatttggacgttcaatggaa
aacaatatcaaaattggtatggaactaggatatatcaaagcgccaccagaaacgtttata
gaacctaataaaataaatagtgtacctaaacacgagttactcattctttgtactggttct
caaggtgaacctatggctgcattatcaagaattgcaaatggtacacataagcaaataaaa
attataccggaagacactgtagtatttagttcttcgcctattccaggtaacactaagagt
atcaatcgtacaattaatgcgttgtacaaagctggtgcagatgtgattcatagtaaaatt
tcaaacattcacacttctggacacggttctcaaggtgatcaacaattaatgttacgtctg
attcaacctaaatacttcctgccaattcacggtgaatatcgtatgcttaaagctcatggt
gagactggtgttcaatgcggtgttgatgaagataatgtatttattttcgatatcggtgat
gtacttgctttaacacatgattctgcacgaaaagcaggaagaattccttccggcaatgta
cttgttgatggcagtggtataggtgatattggcaatgttgtcatcagagatcgtaaatta
ctttcagaagaagggttagttattgttgttgtgagcattgactttaatactaacaaatta
ctatctggccctgatattatttcacgcggttttgtttatatgcgggaatctggtcaatta
atttatgatgctcaacgtaaaattaaaggcgatgtcatttctaaacttaacagcaataaa
gatattcaatggcatcaaattaaatcttcaattatcgaaacattacatccttatctttat
gaaaaaacagctcgaaaacctatgattttacctgtgataatgaaagtaaatgaagataaa
taa
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