KEGG   Staphylococcus epidermidis PM221: SEB_00920
Entry
SEB_00920         CDS       T03289                                 
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
sepp  Staphylococcus epidermidis PM221
Pathway
sepp03030  DNA replication
sepp03430  Mismatch repair
sepp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sepp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SEB_00920
   03430 Mismatch repair
    SEB_00920
   03440 Homologous recombination
    SEB_00920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sepp03032]
    SEB_00920
   03400 DNA repair and recombination proteins [BR:sepp03400]
    SEB_00920
Enzymes [BR:sepp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SEB_00920
DNA replication proteins [BR:sepp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SEB_00920
DNA repair and recombination proteins [BR:sepp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SEB_00920
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 HHH_3 tRNA_anti-codon RNase_H_2 T2SSK YhfH
Other DBs
NCBI-ProteinID: CDM13479
LinkDB
Position
928529..932845
AA seq 1438 aa
MAMTNREKFKVLADQIKISNQLEQDILEQGELTRIDVSNKNRTWTFQISLPHFLSHEDYL
LFTHAIEEEFKEIATVAIDFSIKDTNNQDEFALKYFGHCIDQTRLSPKVKGQLKQKKLIM
SGNVLKVLVSNDIERNHFDKACNGSLVKAFRQCGFEIDKVVFETDSTNHDDDLASLEAHI
QQEDEQSAREATEKLEKMKAEKAKQQDNNESTVEKCQIGKPIQIENIKPIESIIEEEFKV
AIEGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKDDLDHFKALSVGKWVRAQ
GRIEEDTFVRDLVMMMSDIEEIKKTPKQDKAEDKRVEFHLHTSMSQMDGIPNISAYVEQA
AKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIYGMEGMLVDDGVPIAYKPTDRNLKDA
TYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHITDDM
LTDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT
INTEYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMVQQMKELGVNNHLEINKKL
TNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSASLVKYYYRTPRIPRSLLNEYREGILIG
TACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLTQIYKRL
IDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNPLNRSTLPEAHFRTTDEMLDDF
HFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGED
LPQIVIDRLEKELDSIIGNGFSVIYLISQRLVKKSLDDGYLVGSRGSVGSSFVATMTEIT
EVNPLPPHYICSHCKTSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKG
DKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHK
RGAEIDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPADDQSAAWMTTHFDFH
SIHDNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKETMQIFSGPESLGVTEDEILC
KTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRQGICDLSS
VIGCRDDIMVYLMYAGLEPSMAFKTMEFVRKGRGLTDEMVEAMKENNVPDWYLDSCRKIK
YMFPKAHAAAYVLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDM
YSRYMDLGKKEKDVLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPG
LGENVAQRIVEAREEGPFLSKEDLNKKAGLSQKVIDYLDELGSLPDLPDKAQLSIFDM
NT seq 4317 nt   +upstreamnt  +downstreamnt
ttggcaatgacaaatcgagaaaagtttaaagtgcttgccgatcaaataaaaatatcaaat
caactagaacaagatattcttgaacaaggtgaactcactcgtatagatgtttcaaataaa
aacagaacatggactttccaaatatcactcccacattttttatctcatgaagattatctt
ctttttacacatgcaattgaagaagaatttaaagaaatagctacagtagcaattgatttt
tcaattaaagataccaacaatcaagatgagtttgctttaaaatatttcggacattgtatt
gatcaaacacgattgtcgccaaaagtgaaaggtcaattgaaacaaaaaaaactcattatg
agtggaaatgttttaaaagtcttagtttcaaatgacattgagagaaatcattttgataag
gcatgtaatggtagtttggttaaagcatttagacagtgtggctttgaaattgataaagtc
gtttttgaaacagattcaacaaatcacgatgatgaccttgcatcgttagaagcacatatt
caacaagaagatgaacaaagtgcaagagaagcaactgaaaaattagaaaaaatgaaagca
gaaaaagcgaaacaacaagataataatgaaagtacagtggaaaaatgtcagattggaaaa
ccaattcagattgaaaatataaaaccaattgaatcaattattgaagaagaattcaaagta
gctattgaaggtgttatatttgatattaacctaaaagaacttaaaagtggacgtcatata
gttgagcttaaagttactgattacacagattcacttgtattaaaaatgtttacaagaaaa
aataaagatgacttggaccactttaaggcacttagtgttggtaaatgggttagagctcaa
ggtcgtattgaagaagatacttttgttagggatcttgtcatgatgatgtcagatattgaa
gaaattaaaaagacacctaaacaagataaagcagaagataagcgtgtagagtttcattta
catacgtctatgagtcaaatggatggtattcctaatattagtgcatatgttgaacaagct
gctaaatgggggcaccaagctttagcagtaacagatcacaacgtagtacaagcttttcct
gatgcacataatgctgccgaaaaacatggtattaagatgatttatggtatggaaggtatg
ctagtagacgatggtgttcctatagcttataaaccaacagaccgtaatttaaaagatgca
acatatgtggtgtttgacgtagagacaacaggtctttctaatcaatatgataaaattatt
gaattagctgcagtaaaagtgcataacggtgaaattatagataagtttgaacgttttagt
aatccacacgaaagattatctgaaaccattatcaaccttacacatatcactgatgatatg
ttaactgatgctcccgaaattgaagaagtgttaactgaatttaaagagtgggttggagat
gctatatttgtagctcataatgcttcatttgatatgggatttattgacacaggatatgaa
aggttaggctttggaccttctacaaacggtgtaattgatacacttgagctttcacgtaca
attaataccgaatatgggaaacatggtttgaatttccttgccaaaaaatatggtgtcgaa
ttaacgcaacatcatagagcgatttatgatacagaagcaacagcttatatttttataaaa
atggttcaacaaatgaaagaactaggtgtgaacaaccatctagaaattaataaaaaatta
actaatgaagatgcatataaaagagctcgtccatctcacgttacactcattgttcaaaat
caagaaggtcttaaaaatttatttaaaatagttagtgcttcattagttaagtattattac
cgtacgccaagaattccacgttctcttttaaatgaatatcgagaagggatcttgattggt
acagcttgtgatgagggtgaattattcacagcagtaatgcagaaggatcagtcggaagta
gaaaaaatagcaaagttctatgattttatagaagttcaaccgcctgcgctttatcaagat
ttaatggatagagaattaatacgagataatgaaacgttaacacaaatttacaagcgatta
atagatgctggtaaaagcgctaatatcccagtgattgctactggtaacgcgcattatcta
tatgaacatgatgctatagccagaaaaattttaattgcatcccaaccagggaatccatta
aatcgttcaacattaccagaagctcactttagaaccactgatgaaatgttagatgatttt
cacttcttaggtgaagaaaaagcatatgaaatcgttgtaacaaatacaaatgagctcgct
aataaaattgaaaaagtggttcctataaaagataaactatttacgccaagaatggatggg
gctaatgaagaaattcgtgagttgagttattctaatgcgaaaaaactatatggtgaagat
ttaccacaaattgttatagatcgccttgaaaaggaattagatagtattattggtaatggc
ttttctgttatttacctcatatctcaacgtttggtgaagaaatcgctagatgatggttat
ttagttggatcgcgtggttcagttggttctagtttcgtagcaacaatgactgaaattaca
gaagttaatccgcttccaccacactacatttgttcacattgtaagacaagtgagttcttt
gatgatggttcggttggatctggattcgatttaccagataaaaaatgtcctacttgtggt
aatgaattaattaaagaaggacaagatatcccttttgagacattccttggatttaaagga
gataaagttccagatattgatttgaactttagtggtgaatatcaacctaacgctcataat
tacacaaaagtattgtttggtgaagataaagtatttcgtgctggaacaataggtactgtt
gctgaaaaaacagcttttggtttcgtaaaaggttacttaaatgatcaaggtattcacaaa
cgtggtgctgaaattgatcggttggttaaaggttgtacaggggtcaaacgtacaactggt
caacatcctggaggaatcattgttgtaccggattacatggatatttatgattttacaccg
attcaattcccagcagacgaccaaagtgcagcgtggatgacaacccatttcgacttccat
tcaatacacgataatgtcttaaaattagatatattaggacatgatgacccaacgatgatt
cgtatgttacaagacttatcaggaattgaccccaaaactataccagtagatgataaagaa
acaatgcaaatatttagtggtcctgagagtttaggtgttacagaagacgaaatattatgt
aagacaggtacatttggtgtaccagaatttggtactggatttgtacgtcaaatgcttgaa
gatactaagccaacgacattctcagaattagttcaaatttcaggtttatctcatggtacg
gacgtttggttaggtaatgcacaagagttaattcgtcaagggatatgtgacttatctagt
gtgataggctgtcgtgatgatatcatggtatatctgatgtatgctggacttgaaccgtca
atggcttttaaaacgatggaatttgtacgtaaaggtcgtggcttaacagatgaaatggtt
gaagcgatgaaggaaaataacgtgccagattggtatttagattcttgtcgtaaaattaaa
tatatgttccctaaagctcatgccgctgcttatgtactgatggctgtaagaattgcatac
tttaaagtacatcatccactatattattatgcagcatactttaccataagagcttccgat
tttgaccttataacaatgattaaagataaaacgagtattcgtaatacagttaaagatatg
tattcacgatatatggatttagggaaaaaagagaaagatgtattaactgtattagaaata
atgaatgaaatggcgcatcgaggttttcgattgcaaccgattagtttagaaaaaagccaa
gcttttgacttcatcattgaaggggatacattgattcctccattcatttcagtgccagga
cttggagaaaacgttgcacaaagaattgttgaagcgagagaagagggaccatttttatcc
aaagaagatttaaataaaaaagccggcttatctcaaaaggttattgactatttagatgaa
ttaggctcattgccagatttacctgacaaggcacaattgtcgatatttgatatgtaa

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