Staphylococcus epidermidis PM221: SEB_01265
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Entry
SEB_01265 CDS
T03289
Name
(GenBank) ATP-dependent RNA helicase YqfR
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
sepp
Staphylococcus epidermidis PM221
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sepp03019
]
SEB_01265
03009 Ribosome biogenesis [BR:
sepp03009
]
SEB_01265
Enzymes [BR:
sepp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SEB_01265
Messenger RNA biogenesis [BR:
sepp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SEB_01265
Ribosome biogenesis [BR:
sepp03009
]
Prokaryotic type
rRNA helicases
SEB_01265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
CDM13818
LinkDB
All DBs
Position
complement(1292402..1293748)
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AA seq
448 aa
AA seq
DB search
MSKHPFEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLL
PLIQLIESDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQRC
SHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDENA
HLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELID
ILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA
SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLIE
DRGYKFENVDIKNGELKPIKAYNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKFK
QEVEKMKRQERKQYSKKQNRQKRKNNKG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacatccatttgaacactttaatttagatgagaatttaattgaagctgttaaa
aatctcaattttgaaaaaccgactgaaatccaaaatagaatcataccgagaattcttaaa
ggaacaaatttaataggacaatctcaaactggaactggaaagtcacacgcttttctttta
ccattaattcaacttatagaaagtgacattcaagagccacaagccatcgtagtagctcca
acacgtgaacttgctcagcaactatatcaagttgctatgcatttagtaaaattcaaaaaa
ggtataaatgtaaaacttttcattggtggtaccgatttagaaaaagataaacaacgatgt
agccatcaaccacaactcattattggtacaccaacaagaattaatgatttagcacattca
ggttatcttcatgcacatttagcgtcatatttaattatagatgaagctgatttaatgatt
gacctcggtctcattgaagatgttgaccatattgcagcgagattagatgatgaaaatgct
catctagcggtatttagtgcaacaatacctaaatcattacaaccatttttaaataaatat
ttaagtcaaccagaatttgtagaagttgatggcaaagctcataataaagaaaatatcgaa
ttttatctaattcctacaaaaggttctgctaaggtagataaaacattggaattgatagat
atattgaatccttatctatgtattattttctgtaacagtcgtgaaaatgccgatgaattg
gcagacactttaaataaagaaggaattaaaataggtatgattcatggtggtttaacacca
agagaacgtaaacaacaaatgaaaagaataagaaatttagattttcaatttgtcattgca
agcgatcttgcttctagaggaatagatattgaaggcgtaagtcatgttattaatttcgat
gtacccaatgatatcgatttcttcacacatcgcgtaggtcgaacaggaagaggtaattat
aaaggtgtagccattacattatatagtcctgatgaagaaagtaatattactcttattgaa
gacagaggttataaatttgaaaatgtagatattaagaatggtgaattaaaaccgataaag
gcatacaatatgcgtaaatcaagacagcgcaaagatgaccatttaacaaatgaagttaaa
cacaaagtaagaagtaaatcaaaacgtaaagttaaaccaggctataaaaagaagtttaaa
caagaagttgaaaaaatgaaacgtcaagaaagaaaacagtatagtaaaaagcaaaataga
caaaaacgaaaaaataataaaggatag
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