Staphylococcus epidermidis PM221: SEB_01324
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Entry
SEB_01324 CDS
T03289
Name
(GenBank) RecD-like DNA helicase YrrC
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SEB_01324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_01324
Enzymes [BR:
sepp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SEB_01324
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SEB_01324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
AAA
HHH_5
AAA_12
nSTAND3
TniB
Rad17
AAA_14
Mg_chelatase
NPHP3_N
HHH_3
PIF1
Zeta_toxin
AAA_16
TsaE
AAA_28
T2SSE
UvrD-helicase
AAA_29
AAA_18
DUF815
RsgA_GTPase
NB-ARC
AAA_17
T4_y05I_C
ABC_tran
HTH_60
Motif
Other DBs
NCBI-ProteinID:
CDM13875
LinkDB
All DBs
Position
complement(1347422..1349854)
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AA seq
810 aa
AA seq
DB search
MSDPTLFDYSMIKGTVDAILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDV
YTFKGQVVQHPRYGKQLKAETFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGEN
AINDILTRPEILESVPSLPKKKQKQIADQINANQESEKIMIRLHDLGFGPKLSMAIYQFY
MGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG
HTYLPRTIVIETTQNLLNEDIEKPIETEQLLEIIDVLSEEKKLISEADQVSIPSLYYSEL
KSVQNLYRIKTNTSKLKEIEQSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTG
GPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLAAPTGRASKRLHESTGLEAMT
IHRLIGWNQDTQPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ
LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSF
IRCGTNQIPDVVDKVVKSAVAKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDD
REIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFWAKENALNKDVLVVDFEGNEI
TFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL
GEQEAFDIGLKTNGQIRLTQLNDLLKSYFGQNKDNLTTNKQTINEQKENNNHLDLKNEKE
NDIQLNESTIFQIDPMINMGEMTPYDFVER
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccctacactttttgattattcaatgatcaaaggtacagttgatgctatttta
tttcaaaatacggataatttttatactgttctaaaagtagatactatagaatcaaatgaa
aaatttgatagtatgccaactgtggtagggtttcttcccaatgtagttgaaggcgatgtt
tatacttttaaagggcaagtcgtacaacatccacgttatggtaagcaattaaaggctgaa
acatttgaaaaagaattacctcaaactaaagaagccattattagttacttatcaagtgat
ttatttaaaggcatcggtaaaaaaacggctcaaaacattgtaaatacactaggtgaaaat
gctataaatgatattttaactcgtccagaaatcttagaaagtgtacctagtttaccaaag
aagaaacaaaagcaaattgctgatcagattaatgcaaaccaagaatctgagaaaattatg
atacgtttacacgacctagggtttggtccgaaattatcaatggctatatatcagttctat
atgggtgatactttaaatgtcttagataaaaatccttaccaattagtatatgacattaaa
ggtattggttttaataaggctgaccaacttgctcgaaatgtcggtattgagccacattca
cctgaaagattaaaagcagcattattatttacgttagaagaagaatgtatcaaacaagga
catacatatctacctcgtacaattgttatagaaacaacacaaaatttactcaatgaagat
attgagaaaccaattgaaacagagcaattactagaaatcattgacgttttatcagaagag
aaaaaattaatatctgaagctgatcaggtatcaattccaagtttatactattcagaattg
aaaagtgtgcaaaacttataccgaattaaaacaaacacatctaaattaaaagaaatagaa
cagtctgatttacaaatacatattggtgatattgagtcacaaaatgaggttaattactct
gcctctcaaaaagaagcgcttgaaacagcaataaattctaaaattatgcttttaactggt
ggtccgggtaccggtaaaaccacagtcattaaaggtatagttgaattatatgcagaaata
catgggctctcgctcgattatgatgattacaatgaagatgattatccagtagtgttagct
gcacccactggtcgtgcttctaagcgccttcacgaatcgacaggtttagaagcaatgaca
attcatcgtttaatcggttggaaccaagatacacaaccacaggatattttagaaaatgag
atcaatgcaagactcattatcatcgatgaaatgtcaatggtagatacttggttgttccat
caatttttaagcgctgtgcctttagaagcacaaattgtatttgtcggagatgaagatcag
ttaccatcagtaggtccaggacaggtatttaaagaccttattgattctgaaataataccg
cgtgttaatcttaccgaagtatatcgtcagcaagatggttccagtattattgacttagct
caccgtatgaaattaaatgaacctatcgatattactaaacgttatcatgatcgtagtttt
attcgttgtggtacgaatcaaattccagacgttgttgataaagtagttaaaagcgctgta
gctaaaggctatgatatgagtgatatacaagttttggctcctatgtataaaggtaacgct
ggtattaagagacttaaccaagttctacaatctattcttaatccgaagcaacaagatgat
cgtgaaatagaatttggtgaagctgtgtttagaaaaggggataaagtacttcagttagtt
aatcgacctaatgataatatatttaatggggatataggtataatagtaggtatattttgg
gccaaagaaaatgctctaaataaggatgtgttagttgtagattttgaaggtaatgaaatt
acatttactaaacaagatttaatggaactaacacatgcatattgtacatctatccataaa
tcacaaggttcagaatttcctattgtaattatgcctattgttagacaatattataggatg
ttacaacgtcccattctttatacaggattaactagagctaaacaatcacttgttttgctt
ggtgaacaagaagcatttgatataggtttaaaaacaaatggacaaatacgattaacgcaa
ttaaatgatttgttaaaatcgtattttggacaaaacaaagataatttaactacaaataaa
caaacgattaacgaacaaaaagaaaataacaatcatctggatttgaaaaatgaaaaagaa
aatgatatccaattaaacgagtcgacaattttccaaatcgatccaatgattaatatgggg
gaaatgacgccatatgacttcgttgaacgttga
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