Staphylococcus epidermidis PM221: SEB_01691
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Entry
SEB_01691 CDS
T03289
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SEB_01691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sepp03019
]
SEB_01691
03009 Ribosome biogenesis [BR:
sepp03009
]
SEB_01691
Enzymes [BR:
sepp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SEB_01691
Messenger RNA biogenesis [BR:
sepp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SEB_01691
Ribosome biogenesis [BR:
sepp03009
]
Prokaryotic type
rRNA helicases
SEB_01691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CDM14229
LinkDB
All DBs
Position
complement(1732544..1734073)
Genome browser
AA seq
509 aa
AA seq
DB search
MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL
IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGP
QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN
RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ
ELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNRRSKGSKGQSSKKK
NQKKFDRRDKQQKSGNQSLKGRTFADHQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaactagggatttcggataaaacggttcaaacactagaagcaatg
ggatttaaagaaccgacacctatccaaaaagatagcatcccttatgcgttagaaggagat
gacatccttggacaagcccaaactggtactgggaaaacaggggcgtttggtataccttta
attgagaaagttgtaggccaacagggtgttcaatcattaattcttgcgccaacgagagag
cttgctatgcaagtagctgagcaattaagagagttcagtaaaggtcaaaaagtacaagtt
gttacagtctttggtggtatgcctattgaaagacagattaaagcattaaaaagaggccct
caaattgtagtaggtacgccgggaagagttattgatcatcttaatcgtcgtacacttaaa
actcaaggaattcacacgcttattttagatgaagcagatgaaatgatgaatatgggattc
atcgatgatatgagatttattatggataaaattccagctgaacaacgtcaaactatgcta
ttttcagctacgatgccaaaagcaatccaagaattggtacagcagtttatgaaagctcct
aaaataattaagacaatgaataatgaaatgtcagatcctcaaattgatgaatattataca
atagttaaagaattagagaaatttgatacatttacaaactttttagatgttcatcagcct
gaattggcgattgtctttggtcgtactaagcgtcgcgtagatgaattaacaagcgcgcta
ttatctaaaggatacaaagcagaaggtttacatggtgatattacccaagcaaaacgttta
gaagtattgaagaaatttaagaacgatcaaatagatattttagttgctacagatgtggct
gcacgtggtcttgatatttctggtgtgagtcatgtttataattttgatatccctcaagat
acagaaagttatactcaccgtattggacgtactggtcgagcaggaaaagaaggtattgca
gttacttttgtaaatccaattgagatggattatattcgacaaattgaagatgtcaataat
cgtcgaatgaaagcattaagacctccacatcgtaaagaggtgcttaaagcgcgtgaagat
gatattaaagatagagttcaaaactggatgtcaagagaaaatgagccgcgtttacaaaga
atatcaagtgaattacttaaagaatatgatagtacagaattagtagcctctttacttcaa
gaacttgtagaagctaatgatgaagtggaagtacaattaacttttgaaaaaccattagca
cgtaaaaatcgcagtagtaaaggcggttctagaagaagtaatcataaacgtggtaatggt
aagtttgataataaaaatagacgatcaaaagggtctaaaggtcaatcaagcaaaaagaaa
aaccaaaagaaatttgaccgtagagataagcaacaaaaaagtggtaatcaatcactaaaa
ggtcgcacatttgcagatcatcaaaaataa
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