Staphylococcus epidermidis PM221: SEB_01730
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Entry
SEB_01730 CDS
T03289
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SEB_01730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sepp03021
]
SEB_01730
03019 Messenger RNA biogenesis [BR:
sepp03019
]
SEB_01730
Transcription machinery [BR:
sepp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SEB_01730
Messenger RNA biogenesis [BR:
sepp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SEB_01730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
Mor
AAA_25
AAA
YopJ_bacilli
Motif
Other DBs
NCBI-ProteinID:
CDM14268
LinkDB
All DBs
Position
complement(1766211..1767527)
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AA seq
438 aa
AA seq
DB search
MPGRERTSPQYESFHELYKNNTTKELTQKAKSLKLTNYSKLNKKELVLAIMEAQMEKDGN
YYMEGILDDIQQDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPEERILLETQSTNYSTRIMDLVTPIGLGQ
RGLIVAPPKAGKTSLLKEIANAIASNKPEANLFILLVGERPEEVTDIERSVESAEVVHST
FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
ASLHKPKAFFGAARNIEAGGSLTILATALVETGSRMDDMIYEEFKGTGNMELHLDRKLSE
RRIFPAIDIGRSSTRKEELLITKAELDSLWQLRNLFTDSTDFTERFIRKLKRSKNNEEFF
KQLQKAAEESTKTGRPII
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgcctggtagagaacgaacatctccgcagtatgaatctttccacgaattatataaaaac
aatactactaaagagctcactcaaaaagccaaatctttaaaattaactaattacagtaaa
ttaaataaaaaagaattggtacttgccattatggaagcacaaatggaaaaagatggtaat
tactatatggaaggaatattagatgatattcaacaagatggatatggtttcttaagaacc
gttaactattctaaaggtgagaaggatatttatatttctgcaagccaaattcgacgtttt
gaaataaaacgtggtgataaagtaacgggtaaagttcgtaaaccaaaagataatgaaaaa
tattatggtctacttcaagttgattttgtaaacgaccataatgcagaagaagtcaaaaaa
cgtcctcacttccaagctttaacacctctttatccggaagaaagaatcctattagaaacg
caatctacaaattattccactcgtattatggatttagtcacaccaataggtcttggtcaa
cgtggtcttatagttgcaccacctaaagctggtaagacaagtttattaaaagaaatcgct
aacgcaatagcgagtaataaaccggaagcgaatttgtttatattactagtaggtgagcgt
ccagaagaagtgacggatattgaaagatcggttgaatctgcagaagtcgttcattcgact
ttcgatgaaccaccagaacaccatgttaaagttgctgaattattattagagcgtgcaaaa
cgattagttgaaattggagaagatgtaattatacttatggactccataacacgtttggca
cgagcatataatctagtcataccacctagtggacgtacattgtcaggtgggcttgatccc
gcttcattacacaaacctaaagcgtttttcggtgcagcacgtaacattgaagctggggga
agtttgacaattttagctactgctttagttgagacaggatctcgtatggatgatatgatc
tatgaagagttcaagggtacaggtaatatggaattacatcttgatcgtaagttatcagaa
cgtagaatattcccagcgatagacataggtcgtagttcaacacgaaaagaagagctatta
atcactaaagcggaattagattcattatggcaattacgaaatttatttactgattcaaca
gactttacagaacgttttattagaaaacttaagcgttcgaaaaataatgaagaattcttt
aagcaattgcaaaaagcagctgaagagagtactaaaactggaagaccaattatttaa
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