Staphylococcus epidermidis SEI: DP17_2120
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Entry
DP17_2120 CDS
T03343
Name
(GenBank) beta-CASP ribonuclease, RNase J family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
seps
Staphylococcus epidermidis SEI
Pathway
seps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP17_2120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seps03019
]
DP17_2120
Messenger RNA biogenesis [BR:
seps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DP17_2120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AIR82743
UniProt:
A0A0N1MTY4
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Position
complement(2223078..2224760)
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AA seq
560 aa
AA seq
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MKQLHSNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLIRNKLEEHHLLRTTELH
EIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGEPANIAK
MAQLGHEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGVQCGVDEDNVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKGDVISKLNSNKDIQWHQIKSSIIETLHPYLY
EKTARKPMILPVIMKVNEDK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaactacattcaaatgaagtaggtgtatatgcacttggtggtttaggtgaagtt
ggaaaaaatacctatgctgttgagtacaaagatgaaattgtaatcattgatgctggaatc
aaattccctgacgataatctgttaggaattgattatgtaattcctgattacacttactta
gaacagaaccaagataaaattgtcggtctgtttattactcatggacacgaagaccatata
ggtggtgtgcccttcctattaaaacaaattaatgtacctatttacggtggtccattagca
ttaggtctcattcgcaataaactagaagaacatcatttgcttagaacgactgaattacat
gaaatagatgaaagtagcgtaattaagtctaaacattttgaaatttctttctatctaacc
acacatagtattccagaagcatatggcgttatagtcgatacacctgaaggtaaaattgtt
catacgggagacttcaaatttgactttactcctgtaggtgagcctgctaacatagctaaa
atggctcaattaggtcatgaaggtgtgttgtgcttactatcagactcaacaaacgcacta
gttccagattttactttaagtgaacgtgaagttggacagaatgtcgataaaattttcaga
aattgtaaaggtcgtattatctttgcaacttttgcttctaatatttatcgtgttcagcaa
gcagttgaagcagcaattaaatataatcgtaaaatcgttacatttggacgttcaatggaa
aacaatatcaaaattggtatggaactaggatatatcaaagcgccaccagaaacgtttata
gaacctaataaaataaatagtgtacctaaacacgagttactcattctttgtactggttct
caaggtgaacctatggctgcattatcaagaattgcaaatggtacacataagcaaataaaa
attataccggaagacactgtagtatttagttcttcacctattccaggtaacactaagagt
atcaatcgtacaattaatgcgttgtacaaagctggtgcagatgtgattcatagtaaaatt
tcaaacattcacacttctggacacggttctcaaggtgatcaacaattaatgttacgtctg
attcaacctaaatacttcctgccaattcacggtgaatatcgtatgcttaaagctcatggt
gagactggtgttcaatgcggtgttgatgaagataatgtatttattttcgatatcggtgat
gtacttgctttaacacatgattctgcacgaaaagcaggaagaattccttccggcaatgta
ctcgttgatggcagtggtataggtgatattggcaatgttgtcatcagagatcgtaaatta
ctttcagaagaagggttagttattgttgttgtgagcattgactttaatactaacaaatta
ctatctggccctgatattatttcacgcggttttgtttatatgcgggaatctggtcaatta
atttatgatgctcaacgtaaaattaaaggcgatgtcatttctaaacttaacagcaataaa
gatattcaatggcatcaaattaaatcttcaattatcgaaacattacatccttatctttat
gaaaaaacagctcgaaaacctatgattttacctgtgataatgaaagtaaatgaagataag
taa
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