Streptococcus equi subsp. zooepidemicus H70: SZO_00070
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Entry
SZO_00070 CDS
T00871
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seq
Streptococcus equi subsp. zooepidemicus H70
Pathway
seq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SZO_00070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seq03400
]
SZO_00070
Enzymes [BR:
seq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SZO_00070
DNA repair and recombination proteins [BR:
seq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SZO_00070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
DUF3196
Motif
Other DBs
NCBI-ProteinID:
CAW97563
UniProt:
C0MC68
LinkDB
All DBs
Position
5336..8830
Genome browser
AA seq
1164 aa
AA seq
DB search
MDILELFNQNKSIQTWQCDVTSLKRQLVMGLSGSSKAAAIASAYLSFQGKLVVVTSTQND
MEKLAGDLSALLDEGSIFQFFADDTAAAEFIFSSMDKTISRIEALAFLSNPEARGILVIS
LAGLRILLPSPKTFQQGQIDLAVGVDTDLDNVVKKLVKIGYQRVAQVLSPGEFSRRGDIL
DVYEVTQDLPVRIEFFGDEIDGIRSFDIESQKSLQRKDSTSIKPASDMIFEPEDFDRASH
NLEKQLQLAKAEHKGYLEELLTVTKEGLKHKDIRKFQSLFYDNEWTILDYLPKGTPVFFD
DFQKLVDRNAKFDLELAHLLTDDLQQGKSLPFLHYFADNYRELRHYKPATFFSNFHKGLG
NIKFDKVYSLTQYAMQEFFNQFPLLIDEIKRYQKSGATVLLQVESHQAYERLAKSLEAYQ
CQLPLVSADAIVLHQAQIIIGHLAGGFYFADEKLVLITEHEIYHKRLKRRARRTNMSNAE
RLKDYNELSKGDYVVHSVHGIGRFLGIETINIQGVHRDYVTIQYQQSDRISLPVDQLESL
SKYVSADGKEPKINKLNDGRFQKTKQRVKKQVEDIADDLLKLYAERSQQKGFQFSPDDEL
QKAFEEDFAFVETDDQVRSIKEVKKDMESIKPMDRLLVGDVGFGKTEVAMRAAFKAIGDH
KQVAILVPTTVLAQQHYENFRERFENYPVEIAVLSRFRSKKEQSESLERLKKGQVDIIIG
THRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIREMDRGGQVFYVYNKVDTIDKKVAEL
QELVPEASIGFVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFDMYSQLLEQAIASKQGRALTRQKGNAEINLHIDAYLP
SDYIKDERQKIDIYKRIREIDSRAAYSDLQDEIMDRFGDYPDQVAYLLEIGLLKYYLDTA
FAELVEKRDHQVMVRFEVASLQYYLTQDYFEALSKTSLKARISEHQGKIEIIFDVRRQKD
HVILEELILFGETLGEIKSRKASS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttaatcaaaacaagtcaatccagacctggcaatgtgatgta
acaagcttaaaacggcaattagtcatgggcttgtcaggctcaagtaaagcagcagccatt
gcctcagcctatcttagctttcaagggaagctggtcgtggtgacatcaactcaaaatgac
atggaaaaattagctggtgatttgtcagccttgcttgatgagggctctatttttcaattt
tttgcagatgatactgctgcggctgagtttattttctcctctatggataaaacaatctcg
agaatagaggcactagcttttttatcaaatccagaagcaagaggaatattggtcattagc
ttagcaggactcagaatcctacttccaagtcctaagacttttcagcaggggcagattgac
ttagcagtaggagttgacactgatcttgacaacgttgtcaagaagcttgtcaaaattggt
tatcaaagggtggctcaggtccttagtcctggtgaatttagcagacgaggtgatatttta
gatgtttacgaggtaacacaggacttacctgttcgcatcgaattttttggtgatgagatt
gatggtattaggagctttgatatagaaagtcaaaaatctctccaaaggaaggatagcacc
agtatcaagcctgcaagtgatatgatttttgagccggaggattttgatagggctagtcat
aatcttgaaaagcagcttcagcttgctaaggcagaacataaaggctatctggaggagttg
ctcactgtaacaaaagaaggcctgaagcataaggacatccgtaaatttcaatcactgttt
tatgataatgaatggacgattctagattaccttcctaagggaacaccagtattttttgat
gatttccaaaagttagttgacagaaatgctaaatttgacttagagcttgctcatttgttg
acagatgatttacagcaaggaaagtcacttccatttctccattattttgctgacaattat
cgtgagctgcgacactataagcctgccaccttcttttcaaattttcacaagggacttggt
aatattaaatttgataaggtgtatagcttaacacagtatgccatgcaggaatttttcaat
caatttccactgctcattgatgagattaagcggtatcaaaaatctggagcaactgtcctt
ttacaggttgaatctcatcaggcctatgagcggttggcaaaatctcttgaggcttatcaa
tgtcaattgccccttgtttctgctgatgcaatagtattacatcaagcacaaatcattatt
ggtcacctagcaggtgggttttactttgctgatgaaaaattagttttaattactgagcat
gagatatatcataagaggctgaagcgtcgtgctcgtcgtactaatatgagtaatgctgaa
cgcttaaaggattacaatgaattgtctaagggtgattatgtggtccacagtgtgcatggg
attggtcgttttttaggcattgaaacgattaacatacaaggggtacatcgagattatgtc
accattcagtatcagcagtcagatcgaatttctttgcctgttgatcagcttgaaagctta
tcaaaatatgtgtcagcagatggtaaagagccaaagattaacaaattaaacgatggtcgt
tttcaaaaaacaaagcaaagggttaaaaagcaagttgaggatattgcagatgacctgttg
aagctttatgccgagcgtagccagcaaaaaggttttcagttttctccagatgatgagctg
caaaaagcattcgaggaggattttgccttcgttgaaactgatgatcaagttaggtccata
aaagaggttaaaaaggatatggaaagtatcaagcctatggatcgtttactagttggtgat
gttggctttggtaagactgaggtggctatgagagctgcttttaaggctatcggtgaccat
aagcaggtagctatcttagtgccaacgaccgttttagcacagcagcattatgagaatttt
agggaaagatttgagaactatccggttgaaattgctgttttaagccgctttcgcagtaaa
aaagagcaatctgaaagtctagaaaggctaaaaaagggtcaggttgatattattattggg
actcataggttgctgtcaaaggatgtgattttttcagatttaggcttgattgtcattgat
gaagagcagcgttttggtgttaagcataaagaaaccctaaaggaattaaagactaaggtt
gatgtccttacactgactgcaacgcctattcctcgtaccctgcatatgtctatgcttggt
attcgggatttatcagtgattgagacgcctcctacgaatcgctatcctgttcagacctat
gttttagaaaacaatcctggcttgattagagaagctattattcgagaaatggatcgtggt
ggtcaagtcttttatgtttacaataaggttgacacgattgacaagaaggtggcagagctg
caagaattggttccagaggcttctattggttttgtccatggtcaaatgagtgatattcag
cttgagaataccttgatggattttatcaatggtgattatgatgtcttagttgcaacaact
attattgagacaggggttgatatttctaatgtcaataccttgtttattgaaaatgctgat
catatgggactatcaaccttgtatcagcttcgaggtcgtgttggaaggagcaatcgtatt
gcctatgcttatctcatgtataagcctgataaggtactaacagaggtttccgaaaaaagg
ttagaagctattaagggctttacagagctggggtctggctttaaaattgctatgcgagat
ttatctattcggggagcaggaaatatattgggtgcttcgcaaagtggttttattgactca
gttggctttgacatgtattctcagctgctagagcaggctattgcaagtaagcaaggaaga
gcgttgacgcgacaaaaaggtaatgcagagattaatctccatattgatgcttatttacct
agtgattatatcaaagacgagcgtcaaaaaattgacatttataagcgcattcgtgagatt
gactctagagcagcttattctgatttgcaagatgaaatcatggatcgttttggtgactat
cctgatcaggtagcctatttactggagattggcttgttaaaatactatttggatacagcc
tttgctgaattagttgagaagagggaccatcaggttatggttaggtttgaggttgcttcg
cttcaatactatttgacacaggattattttgaggctctgtcaaaaacaagcttaaaagca
aggattagtgagcatcagggtaaaattgaaattatctttgatgttagacgtcagaaagac
catgtcattttagaagaattgatactttttggagagacacttggtgagattaaatctaga
aaagcttcctcataa
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