Streptococcus equi subsp. zooepidemicus CY: Q426_02990
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Entry
Q426_02990 CDS
T03306
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sequ
Streptococcus equi subsp. zooepidemicus CY
Pathway
sequ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sequ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q426_02990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sequ03019
]
Q426_02990
Messenger RNA biogenesis [BR:
sequ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q426_02990
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF2498
Motif
Other DBs
NCBI-ProteinID:
AIA67415
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Position
596776..598437
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AA seq
553 aa
AA seq
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MTDINIIALGGVREYGKNFYLVEINDSMFILDAGLKYPETEQLGVDLVIPNLDYVIENKD
KVQGVFLSHGHADAIGALPYLLAEVPVPVFGSELTIELAKLFVKANNSTKRFKNFHVVDS
DTEIEFKDGLVSFFKTTHSIPESLGVVIGTDKGNIVYTGDFKFDQASREGYQTDLARLAD
IGKEGVLALLADSANATSNEQTASEAEVGEEMDKVIAHADGRIIIAAVASNLVRIQQVFD
SAAAYSRRVVLTGTDAENIVRTALRLKKLVIADEKLLIKPKDMSKFEDHELIVLEAGRMG
EPINSLQKMAIGRHRHVQIKDGDLVYIVTTPSAAKEAMVARVENLIYKAGGSVKLITQHL
RVSGHANARDLQLMINLVKPKYLFPIQGEYRDLAAHAHLAEEAGMLPENIHIMKRGDIMV
FDGEGFLHEGAVPASDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVSKKEKRIISK
AKVNTRGFVYVKKSRDILRESAELVNTTVGNYLQGDHFDWSELKGSVREELSRFLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgactgatataaacattattgcattaggaggcgtacgtgagtacgggaagaacttctat
ttagtagagattaacgattctatgttcattttagatgcgggcttgaaataccctgaaaca
gaacagctaggtgtggatttggttattccaaatcttgattatgtgattgaaaacaaagat
aaggttcagggggtctttttaagtcatgggcatgctgatgctatcggggctttgccttat
ctgctggcagaggttccagtacctgtatttggctcagaattgaccatcgagctagcaaaa
ttgtttgtcaaagccaataatagcaccaagagatttaagaacttccatgtggttgacagc
gacacagagatcgaatttaaagacggcttggtttccttctttaagacaacacattctatt
cctgaaagcttaggtgtggttattggaaccgataaggggaatattgtctatacaggtgat
ttcaagtttgaccaggcctcgcgtgagggctatcagacagacctagctcgcttagcagac
attggaaaagaaggggtgttagctctattagctgactcggccaatgccacaagcaatgag
cagactgccagcgaagctgaggttggcgaggaaatggacaaggtaattgctcatgccgac
gggcggattatcattgcagctgtcgcttcaaatcttgttcgtattcagcaggtctttgat
tctgcagcagcctatagcaggcgagtggtactgacaggtactgacgctgaaaatattgtc
agaacagcacttcgtcttaaaaagctagtgattgctgatgaaaagctattaatcaagcca
aaggatatgtctaagtttgaggatcacgaattgattgttctggaagctggacgtatgggt
gagccgattaatagcctacagaaaatggcaatagggcgtcatcgccatgtgcaaatcaag
gacggagatctggtttacattgtcacaacgccaagcgctgccaaggaagcaatggttgct
cgtgttgaaaaccttatctataaagcaggtggctctgttaagctcatcacgcagcattta
cgtgtttctggacatgccaatgcgcgtgacctgcagctgatgattaatctcgtcaaacca
aaatacctgttcccgattcaaggtgaataccgcgatctagctgctcatgctcatttagct
gaggaggctggtatgctacctgagaatattcatattatgaagcgtggtgacattatggtg
tttgatggggagggcttcttgcatgagggtgctgttcctgctagtgatgtgatgattgat
ggaaatgcaattggtgatgttggcaatattgttttgagagaccgcaaggtcttatcagag
gatggtatttttattgttgcgatcacagtatctaaaaaggaaaaacgtattatctctaag
gctaaggtcaacactcgcggatttgtctatgtgaaaaagagcagagatattttacgagaa
agtgctgaattggtcaacacaacagttggcaattatctgcaaggggatcattttgattgg
agtgaattgaaaggctctgttagagaggagctctcaaggtttttatttgagcagaccaag
cgtcggccagctattcttccggttgttatggaggtccgttaa
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