Staphylococcus epidermidis RP62A (MRSE): SERP0683
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Entry
SERP0683 CDS
T00229
Symbol
pdhD
Name
(GenBank) pyruvate dehydrogenase complex E3 component, lipoamide dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
ser
Staphylococcus epidermidis RP62A (MRSE)
Pathway
ser00010
Glycolysis / Gluconeogenesis
ser00020
Citrate cycle (TCA cycle)
ser00260
Glycine, serine and threonine metabolism
ser00280
Valine, leucine and isoleucine degradation
ser00310
Lysine degradation
ser00380
Tryptophan metabolism
ser00620
Pyruvate metabolism
ser00630
Glyoxylate and dicarboxylate metabolism
ser00640
Propanoate metabolism
ser00670
One carbon pool by folate
ser00785
Lipoic acid metabolism
ser01100
Metabolic pathways
ser01110
Biosynthesis of secondary metabolites
ser01120
Microbial metabolism in diverse environments
ser01200
Carbon metabolism
ser01210
2-Oxocarboxylic acid metabolism
ser01240
Biosynthesis of cofactors
Module
ser_M00009
Citrate cycle (TCA cycle, Krebs cycle)
ser_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
ser_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
ser_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
ser00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SERP0683 (pdhD)
00020 Citrate cycle (TCA cycle)
SERP0683 (pdhD)
00620 Pyruvate metabolism
SERP0683 (pdhD)
00630 Glyoxylate and dicarboxylate metabolism
SERP0683 (pdhD)
00640 Propanoate metabolism
SERP0683 (pdhD)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SERP0683 (pdhD)
00280 Valine, leucine and isoleucine degradation
SERP0683 (pdhD)
00310 Lysine degradation
SERP0683 (pdhD)
00380 Tryptophan metabolism
SERP0683 (pdhD)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SERP0683 (pdhD)
00670 One carbon pool by folate
SERP0683 (pdhD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ser04147
]
SERP0683 (pdhD)
Enzymes [BR:
ser01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
SERP0683 (pdhD)
Exosome [BR:
ser04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
SERP0683 (pdhD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
GIDA
FAD_oxidored
HI0933_like
NAD_binding_8
FAD_binding_2
FAD_binding_3
3HCDH_N
DAO
UDPG_MGDP_dh_N
AlaDh_PNT_C
Thi4
Motif
Other DBs
NCBI-ProteinID:
AAW54055
UniProt:
Q5HQ73
LinkDB
All DBs
Position
679038..680444
Genome browser
AA seq
468 aa
AA seq
DB search
MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
ASHRFVEAQNSENLGVIAESVSLNYQKVQEFKTSVVNKLTGGVEGLLKGNKVEIVRGEAY
FVDNNSLRVMDEKSAQTYNFKHAIIATGSRPIEIPNFEFGKRVIDSTGALNLQEVPNKLV
VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGIEIVTEAMA
KSAEETENGVKVTYEAKGEEQTIEADYVLVTVGRRPNTDELGLEELGLKFADRGLLEVDK
QSRTSIENIFAIGDIVPGLPLAHKASYEGKVAAEAIDGQAAEVDYIGMPAVCFTEPELAQ
VGYTEAQAKEEGLSIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
DIISELGLAIESGMNAEDIALTVHAHPTLGEMTMEAAEKAIGYPIHTM
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggtagttggagatttcccaattgaaacagatactattgtaataggagcaggtccaggt
ggatatgtcgcagccattcgcgcggctcaattaggacaaaaggtaacaatcgttgagaaa
ggtaatttaggtggtgtatgcttaaacgttggttgtataccttcaaaagcattactacat
gcttctcatcgctttgttgaagcgcaaaattcagaaaacttaggggtaattgctgaaagc
gtttcgttaaactatcaaaaagttcaagaattcaagacttctgtagttaataaattaact
ggcggtgttgaaggacttttaaaaggtaacaaagtagagattgttagaggtgaagcttat
ttcgttgataacaatagtttacgtgtcatggacgaaaagagtgctcaaacttacaatttc
aaacatgcgattatagctacaggttcaagaccaattgaaattccaaattttgaatttggt
aaacgtgttatcgattcaacaggagctttaaatctacaagaagtacctaacaaactagtt
gtagttggtggcggatatatcggttctgaattaggtactgcttttgcaaactttggctct
gaagttactatccttgaaggtgcaaaagatattttaggcggatttgaaaagcaaatgaca
caacctgttaaaaaaggtatgaaagaaaaaggtatcgaaatcgttactgaagcaatggca
aaatctgcagaagaaactgaaaatggtgtcaaagtaacttatgaggcaaaaggtgaggaa
caaactatcgaagctgattatgtattagttacagttggccgtcgccctaatactgatgaa
ttaggattagaagaacttggtctgaaatttgctgatcgtggattactagaagtggacaaa
caaagtcgtacttctattgaaaatatctttgcgattggagatattgtacctggattacca
ttagctcacaaagctagttatgaaggtaaagttgctgctgaagcgatagatggtcaagcc
gcagaggtagactatattggtatgccagcagtttgctttacagaaccagaattagcacaa
gttggttatactgaagctcaagcaaaagaagaaggtttatcaattaaagcttctaaattc
ccttatgcagctaatggacgagctttatcattagatgatacaaatggttttgttaagtta
attacacttaaagaagatgatacgcttattggagcacaagttgtaggtactggcgcatct
gatattatctctgaattaggtttagctattgagtcaggtatgaatgctgaagatatcgca
ttaactgtacatgcacacccaactttaggtgaaatgacaatggaagctgctgaaaaagca
attggttatccaattcatactatgtaa
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