Staphylococcus epidermidis RP62A (MRSE): SERP1688
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Entry
SERP1688 CDS
T00229
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ser
Staphylococcus epidermidis RP62A (MRSE)
Pathway
ser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERP1688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ser03019
]
SERP1688
03009 Ribosome biogenesis [BR:
ser03009
]
SERP1688
Enzymes [BR:
ser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SERP1688
Messenger RNA biogenesis [BR:
ser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SERP1688
Ribosome biogenesis [BR:
ser03009
]
Prokaryotic type
rRNA helicases
SERP1688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAW55051
UniProt:
Q5HME0
LinkDB
All DBs
Position
complement(1730758..1732287)
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AA seq
509 aa
AA seq
DB search
MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL
IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGP
QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN
RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ
ELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNRRSKGSKGQSSKKK
NQKKFDRRDKQQKSGNQSLKGRTFADHQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaactagggatttcggataaaacggttcaaacactagaagcaatg
ggatttaaagaaccgacacctatccaaaaagatagcatcccttatgcgttagaaggagat
gacatccttggacaagcccaaactggtactgggaaaacaggggcgtttggtataccttta
attgagaaagttgtaggccaacagggtgttcaatcattaattcttgcgccaacgagagag
cttgctatgcaagtagctgagcaattaagagagttcagtaaaggtcaaaaagtacaagtt
gttacagtctttggtggtatgcctattgaaagacagattaaagcattaaaaagaggccct
caaattgtagtaggtacgccgggaagagttattgatcatcttaatcgtcgtacacttaaa
actcaaggaattcacacgcttattttagatgaagcagacgaaatgatgaatatgggattc
atcgatgatatgagatttattatggataaaattccagctgaacaacgtcaaactatgcta
ttttcagctacgatgccaaaagcaatccaagaattggtacagcagtttatgaaagctcct
aaaataattaagacaatgaataatgaaatgtcagatcctcaaattgatgaatattataca
atagttaaagaattagagaaatttgatacatttacaaactttttagatgttcatcagcct
gaattggcgattgtctttggtcgtactaagcgtcgcgtagatgaattaacaagcgcgcta
ttatctaaaggatacaaagcagaaggtttacatggtgatattacccaagcaaaacgttta
gaagtattgaagaaatttaagaacgatcaaatagatattttagttgctacagatgtggct
gcacgtggtcttgatatttctggtgtgagtcatgtttataattttgatatccctcaagat
acagaaagttatactcaccgtattggacgtactggtcgagcaggaaaagaaggtattgca
gttacttttgtaaatccaattgagatggattatattcgacaaattgaagatgtcaataat
cgtcgaatgaaagcattaagacctccacatcgtaaagaggtgcttaaagcgcgtgaagat
gatattaaagatagagttcaaaactggatgtcaagagaaaatgagccgcgtttacaaaga
atatcaagtgaattacttaaagaatatgatagtacagaattagtagcctctttacttcaa
gaacttgtagaagctaatgatgaagtggaagtacaattaacttttgaaaaaccattagca
cgtaaaaatcgcagtagtaaaggcggttctagaagaagtaatcataaacgtggtaatggt
aagtttgataataaaaatagacgatcaaaagggtctaaaggtcaatcaagcaaaaagaaa
aaccaaaagaaatttgaccgtagagataagcaacaaaaaagtggtaatcaatcactaaaa
ggtcgcacatttgcagatcatcaaaaataa
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