Prodigiosinella confusarubida ATCC 39006: Ser39006_001210
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Entry
Ser39006_001210 CDS
T05290
Name
(GenBank) AAA family ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Ser39006_001210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sera03019
]
Ser39006_001210
03009 Ribosome biogenesis [BR:
sera03009
]
Ser39006_001210
04131 Membrane trafficking [BR:
sera04131
]
Ser39006_001210
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sera04147
]
Ser39006_001210
Messenger RNA biogenesis [BR:
sera03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Ser39006_001210
Ribosome biogenesis [BR:
sera03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Ser39006_001210
Membrane trafficking [BR:
sera04131
]
SNARE
SNARE associated proteins
Others
Ser39006_001210
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Ser39006_001210
Exosome [BR:
sera04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Ser39006_001210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_5
AAA_16
AAA_2
CDC48_2
AAA_14
AAA_22
AAA_33
nSTAND3
TIP49
Zeta_toxin
AAA_18
Rad17
IstB_IS21
AAA_17
NPHP3_N
Mg_chelatase
Sigma54_activat
AAA_28
RNA_helicase
TsaE
AAA_7
Sigma54_activ_2
ABC_tran
AAA_3
NTPase_1
Molydop_binding
SKI
Motif
Other DBs
NCBI-ProteinID:
AUH02876
UniProt:
M9WML1
LinkDB
All DBs
Position
complement(262942..265104)
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AA seq
720 aa
AA seq
DB search
MSEELKLKVAEALPKDAGRGYARLDPADMARLNLAVGDIVQLTSKKGTGIAKLMPTYPDM
RNKGIVQLDGLTRRNTSLSLDEKVQIEPASCKHATQIVLIPTTITPNQRDLDYIGSLLDG
LPVQKGDLLRAHLFGSRSADFKVESTIPDGAVLIDPTTTLVIGKSNAVGNSSHSTQRLSY
EDVGGLKNQVRRIREMIELPLRYPEVFERLGIDAPKGVLLSGPPGCGKTLIARIIAQETD
AQFFTISGPEIVHKFYGESEAHLRKIFEEAGRKGPSIIFLDEIDSIAPHRDKVVGDVEKR
IVAQLLALMDGLKNRGKVIVIAATNLPNAIDPALRRPGRFDREISIPIPDREGRREIIEI
HSTGMPLNADVDLNVLADITHGFVGADLEALCREAAMSALRRLLPEIDFSSAELPYDRLA
ELTVMMDDFRAALCEVSPSAIRELFVDIPDVRWEDVGGLDDVRRRLIESVEWPIKYPELY
EQAGVKPPKGLLLAGPPGVGKTLIAKAVANESGVNVISVKGPALMSRYVGDSEKGVRELF
LKARQAAPCIIFLDEVDSVIPARNEGAIDSHVAERVLSQFLSEMDGLEELKGVFVMGATN
RADLIDPAMLRPGRFDEIIELGLPDEDARRQILAVHLRNKPLGDNIHADDLAERCDGASG
AELAAVCNRAALAALRRAIQQSEEAVLSPSTVGETPVALTVRIEQHDFAEVIAEMFGDDA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaactcaagctcaaggtcgccgaggctctgccaaaggatgctgggcgcggt
tatgctcgcttagatccggccgatatggccaggttaaatctggctgtcggtgacatagtg
cagttaaccagtaaaaaaggcaccgggattgctaaattgatgccgacttatcccgatatg
cggaataaaggcatcgtacaactggatggtttgacgcggcgtaataccagcctgagttta
gatgaaaaagtgcagattgaacccgcttcctgcaaacacgccacacagatcgtcctcatt
cccaccacgattacgcccaaccaacgtgacctggattatatcggtagcctgctcgatggg
ttgcccgtacagaaaggcgatctgctgcgcgcgcacctgtttggcagtcgttctgctgat
tttaaagtcgaaagcaccatacctgatggtgcggtactgattgatccgaccacgacactg
gtgattggcaaatcaaatgctgtcgggaattcgagtcatagcacacaacgtttgtcgtat
gaggatgttggcggccttaaaaaccaggtgcggcgtattcgagaaatgatcgaattacca
ttacgctatcctgaggtctttgaacgtttaggtatagatgcccccaaaggtgtactgctc
tctggtcccccgggatgtggtaaaaccctcatcgcccgcattattgcgcaagaaaccgat
gcgcaattttttaccatcagcggcccggaaattgtgcataagttttatggtgaaagtgaa
gcccacttacgcaaaatttttgaggaagccggacgcaaagggccaagtatcatttttctg
gatgaaattgactctattgcaccacaccgcgacaaggtcgtcggtgatgtagaaaaacgt
atcgttgcgcaactgctcgcattaatggatggtctcaagaatcgaggcaaagtcattgtc
attgccgcgaccaatctacctaatgcgattgatcccgcgttgcgccgtccgggacgcttt
gaccgtgaaatcagcattcctattccagaccgtgaaggtcgccgcgagattatcgaaatt
catagcacgggaatgccgctgaatgctgatgtcgatctgaacgtgcttgccgatatcact
cacggttttgtcggtgccgatctggaagcgttatgccgtgaagccgcgatgagtgcgtta
cgccgtttactgcctgagatcgatttcagttcggcggagctaccttatgatcgtctggcc
gaattaacggtgatgatggatgattttcgtgccgccttgtgtgaagtatcaccgtcagcg
attcgtgagctgttcgtcgatattcccgatgtgcgttgggaagatgtcggcggtttggat
gacgtacgccgtcgattgatcgaatccgtcgagtggcctatcaagtaccctgagctctat
gaacaagcgggtgttaagccgcctaaaggtctgctgttagctgggcctcccggcgttggg
aaaacgctgatcgccaaagccgttgctaatgaaagtggcgttaatgtcatttcagttaaa
ggtccggcgctgatgtcgcgttatgtcggtgattcggaaaaaggtgtccgagagctgttt
ctcaaagctcgtcaggctgcgccctgcattattttccttgatgaagtcgattctgtgatt
cctgcccgtaacgagggcgctatcgactcacatgtcgcagaacgggtgttgagccaattc
ttatctgaaatggatgggctggaagaactcaaaggtgttttcgttatgggggcgaccaat
cgtgcggacttgatcgatcccgcgatgctgcgaccaggacgttttgatgaaataatcgaa
ttgggcctgcccgacgaggacgcccgtcggcagattctggcggtgcatttacgtaataaa
ccgctgggtgacaatattcatgctgacgatttggcagaacgttgtgatggtgccagcggt
gcagaattggccgcggtgtgtaatcgtgccgcattagcggcattgcgtcgtgcaatccag
cagtctgaagaggctgttctgagcccgtcaacggtaggagaaacccctgtggcgctgacg
gtacgcattgaacagcatgattttgctgaagtgattgccgaaatgtttggcgatgatgca
tga
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